kmeans.split 20 - GCRMA

Cluster 1 - contains 208 genes

Molecular Function
  terms counts expected.values pvals
GO:0005372water transporter activity40.280.00017
GO:0015250water channel activity40.280.00017
GO:0016765transferase activity, transferring alkyl or aryl (other than methyl) groups51.080.00467
GO:0016798hydrolase activity, acting on glycosyl bonds93.520.00920

Biological Pathway
  terms counts expected.values pvals
GO:0042221response to chemical stimulus 28 9.392.2e-07
GO:0009628response to abiotic stimulus 35 13.853.1e-07
GO:0009719response to endogenous stimulus 23 7.331.2e-06
GO:0009733response to auxin stimulus 12 2.131.6e-06
GO:0009725response to hormone stimulus 18 5.164.6e-06
GO:0050896response to stimulus 41 20.379.3e-06
GO:0009605response to external stimulus 11 2.545.2e-05
GO:0007242intracellular signaling cascade 13 3.811.2e-04
GO:0007154cell communication 20 7.881.3e-04
GO:0008361regulation of cell size 7 1.313.5e-04
GO:0000902cellular morphogenesis 7 1.497.6e-04
GO:0009653morphogenesis 10 2.947.7e-04
GO:0044255cellular lipid metabolism 11 3.487.9e-04
GO:0007264small GTPase mediated signal transduction 5 0.781.1e-03
GO:0007165signal transduction 17 7.361.2e-03
GO:0009826unidimensional cell growth 5 0.952.7e-03
GO:0009987cellular process113 93.683.0e-03
GO:0040007growth 6 1.514.2e-03
GO:0008610lipid biosynthesis 8 2.604.8e-03
GO:0009753response to jasmonic acid stimulus 5 1.125.4e-03
GO:0006629lipid metabolism 12 5.115.4e-03
GO:0007582physiological process118100.516.4e-03
GO:0050875cellular physiological process108 90.536.7e-03
GO:0009861jasmonic acid and ethylene-dependent systemic resistance 5 1.268.7e-03
GO:0016049cell growth 5 1.279.0e-03

Cellular Component
  terms counts expected.values pvals
GO:0016020membrane 72 51.770.00087
GO:0031225anchored to membrane 8 2.040.00106
GO:0044464cell part147127.310.00125
GO:0005623cell147127.310.00125
GO:0000178exosome (RNase complex) 4 0.510.00165
GO:0005576extracellular region 6 1.260.00172
GO:0005618cell wall 7 1.870.00282
GO:0030312external encapsulating structure 7 1.910.00317

list of genes (text format)

Cluster 2 - contains 271 genes

Molecular Function
  terms counts expected.values pvals
GO:0016491oxidoreductase activity26160.0085

Biological Pathway
  terms counts expected.values pvals
GO:0007275development 28 12.063.0e-05
GO:0005984disaccharide metabolism 7 0.965.0e-05
GO:0009653morphogenesis 13 3.658.2e-05
GO:0000902cellular morphogenesis 9 1.851.0e-04
GO:0040007growth 9 1.881.1e-04
GO:0016049cell growth 8 1.581.9e-04
GO:0008361regulation of cell size 8 1.632.3e-04
GO:0008202steroid metabolism 5 0.572.6e-04
GO:0009725response to hormone stimulus 17 6.412.6e-04
GO:0016052carbohydrate catabolism 8 1.804.6e-04
GO:0044275cellular carbohydrate catabolism 8 1.804.6e-04
GO:0009828cell wall loosening (sensu Magnoliophyta) 4 0.395.9e-04
GO:0009827cell wall modification (sensu Magnoliophyta) 4 0.438.5e-04
GO:0007582physiological process149124.718.6e-04
GO:0006694steroid biosynthesis 4 0.449.6e-04
GO:0050896response to stimulus 41 25.281.2e-03
GO:0006066alcohol metabolism 9 2.631.4e-03
GO:0042221response to chemical stimulus 23 11.651.5e-03
GO:0009414response to water deprivation 6 1.251.6e-03
GO:0009825multidimensional cell growth 4 0.511.6e-03
GO:0046352disaccharide catabolism 4 0.511.6e-03
GO:0046351disaccharide biosynthesis 4 0.521.8e-03
GO:0009987cellular process139116.251.8e-03
GO:0006629lipid metabolism 15 6.341.9e-03
GO:0042398amino acid derivative biosynthesis 7 1.762.0e-03
GO:0009719response to endogenous stimulus 19 9.092.0e-03
GO:0009628response to abiotic stimulus 30 17.192.0e-03
GO:0009415response to water 6 1.352.4e-03
GO:0050875cellular physiological process133112.334.1e-03
GO:0044255cellular lipid metabolism 11 4.324.3e-03
GO:0009605response to external stimulus 9 3.154.6e-03
GO:0006869lipid transport 5 1.094.8e-03
GO:0009733response to auxin stimulus 8 2.645.2e-03
GO:0008610lipid biosynthesis 9 3.235.3e-03
GO:0009826unidimensional cell growth 5 1.196.7e-03
GO:0009664cell wall organization and biogenesis (sensu Magnoliophyta) 5 1.207.1e-03
GO:0019752carboxylic acid metabolism 14 6.687.5e-03
GO:0042545cell wall modification 5 1.227.7e-03
GO:0006082organic acid metabolism 14 6.717.8e-03
GO:0007047cell wall organization and biogenesis 7 2.308.6e-03
GO:0045229external encapsulating structure organization and biogenesis 7 2.308.6e-03
GO:0006575amino acid derivative metabolism 7 2.308.6e-03

Cellular Component
  terms counts expected.values pvals
GO:0031225anchored to membrane12 2.61.3e-05
GO:0005783endoplasmic reticulum 7 1.33.5e-04
GO:0016020membrane9066.35.6e-04
GO:0009505cell wall (sensu Magnoliophyta) 8 2.11.3e-03
GO:0044425membrane part2311.61.4e-03
GO:0031224intrinsic to membrane18 8.52.3e-03
GO:0005618cell wall 8 2.42.9e-03
GO:0030312external encapsulating structure 8 2.43.3e-03

list of genes (text format)

Cluster 3 - contains 71 genes

Molecular Function - no significant GO terms found

Biological Pathway
  terms counts expected.values pvals
GO:0009651response to salt stress 50.520.00017
GO:0006970response to osmotic stress 50.580.00028
GO:0009628response to abiotic stimulus124.350.00108
GO:0009416response to light stimulus 50.800.00122
GO:0009314response to radiation 50.810.00129
GO:0006950response to stress103.550.00255
GO:0050789regulation of biological process135.510.00269
GO:0050896response to stimulus146.400.00362
GO:0050791regulation of physiological process125.140.00437
GO:0009605response to external stimulus 40.800.00831

Cellular Component - no significant GO terms found

list of genes (text format)

Cluster 4 - contains 218 genes

Molecular Function
  terms counts expected.values pvals
GO:0003700transcription factor activity2814.80.00079
GO:0030528transcription regulator activity3016.30.00082
GO:0016765transferase activity, transferring alkyl or aryl (other than methyl) groups 5 1.10.00577

Biological Pathway
  terms counts expected.values pvals
GO:0009628response to abiotic stimulus4113.852.4e-10
GO:0050896response to stimulus5020.371.1e-09
GO:0006950response to stress3111.302.9e-07
GO:0042221response to chemical stimulus27 9.397.5e-07
GO:0009408response to heat 7 0.695.8e-06
GO:0019748secondary metabolism13 3.111.5e-05
GO:0009814defense response to pathogen, incompatible interaction10 1.922.4e-05
GO:0009861jasmonic acid and ethylene-dependent systemic resistance 8 1.263.9e-05
GO:0009611response to wounding 9 1.756.9e-05
GO:0009753response to jasmonic acid stimulus 7 1.121.4e-04
GO:0009719response to endogenous stimulus19 7.331.4e-04
GO:0048511rhythmic process 4 0.292.0e-04
GO:0007623circadian rhythm 4 0.292.0e-04
GO:0051707response to other organism15 5.182.3e-04
GO:0009605response to external stimulus10 2.542.5e-04
GO:0009416response to light stimulus10 2.552.5e-04
GO:0009651response to salt stress 8 1.662.7e-04
GO:0009314response to radiation10 2.582.8e-04
GO:0006970response to osmotic stress 8 1.855.5e-04
GO:0010038response to metal ion 5 0.696.4e-04
GO:0009613response to pest, pathogen or parasite13 4.526.5e-04
GO:0009751response to salicylic acid stimulus 6 1.056.5e-04
GO:0042829defense response to pathogen11 3.457.3e-04
GO:0009607response to biotic stimulus16 6.518.6e-04
GO:0009411response to UV 4 0.451.1e-03
GO:0010035response to inorganic substance 5 0.811.3e-03
GO:0009733response to auxin stimulus 8 2.131.4e-03
GO:0009723response to ethylene stimulus 6 1.221.4e-03
GO:0046686response to cadmium ion 4 0.491.5e-03
GO:0009266response to temperature stimulus 8 2.181.6e-03
GO:0009739response to gibberellic acid stimulus 5 0.912.2e-03
GO:0042828response to pathogen11 4.163.2e-03
GO:0009725response to hormone stimulus12 5.165.9e-03
GO:0006952defense response12 5.165.9e-03
GO:0006720isoprenoid metabolism 5 1.156.1e-03
GO:0016096polyisoprenoid metabolism 4 0.787.6e-03
GO:0006721terpenoid metabolism 4 0.787.6e-03
GO:0042214terpene metabolism 4 0.798.0e-03

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid 5034.00.0026
GO:0005829cytosol 8 2.60.0043
GO:0005622intracellular10688.40.0073
GO:0009507chloroplast 4733.40.0079

list of genes (text format)

Cluster 5 - contains 166 genes

Molecular Function
  terms counts expected.values pvals
GO:0005478intracellular transporter activity40.260.00012

Biological Pathway
  terms counts expected.values pvals
GO:0006944membrane fusion50.254.6e-06
GO:0016044membrane organization and biogenesis50.373.2e-05
GO:0042157lipoprotein metabolism82.827.5e-03
GO:0042158lipoprotein biosynthesis82.827.5e-03
GO:0006497protein amino acid lipidation82.827.5e-03

Cellular Component
  terms counts expected.values pvals
GO:0008372cellular component unknown6747.360.00042
GO:0044431Golgi apparatus part 4 0.470.00127
GO:0005794Golgi apparatus 4 0.610.00330

list of genes (text format)

Cluster 6 - contains 481 genes

Molecular Function
  terms counts expected.values pvals
GO:0005515protein binding 66 33.266.2e-08
GO:0005488binding180144.041.6e-04
GO:0030528transcription regulator activity 57 35.292.2e-04
GO:0004840ubiquitin conjugating enzyme activity 6 0.902.5e-04
GO:0008270zinc ion binding 35 18.943.7e-04
GO:0008639small protein conjugating enzyme activity 6 0.973.8e-04
GO:0003700transcription factor activity 51 31.996.4e-04
GO:0004707MAP kinase activity 4 0.461.0e-03
GO:0008017microtubule binding 4 0.511.5e-03
GO:0004702receptor signaling protein serine/threonine kinase activity 5 0.881.7e-03
GO:0005057receptor signaling protein activity 5 0.901.9e-03
GO:0015631tubulin binding 4 0.602.8e-03
GO:0016879ligase activity, forming carbon-nitrogen bonds 12 4.924.1e-03
GO:0016874ligase activity 15 6.914.2e-03
GO:0003677DNA binding 59 41.814.3e-03
GO:0030508thiol-disulfide exchange intermediate activity 6 1.645.9e-03
GO:0016773phosphotransferase activity, alcohol group as acceptor 33 20.866.5e-03
GO:0004806triacylglycerol lipase activity 4 0.797.5e-03
GO:0004672protein kinase activity 29 18.028.3e-03

Biological Pathway
  terms counts expected.values pvals
GO:0009628response to abiotic stimulus 67 29.883.2e-10
GO:0042221response to chemical stimulus 52 20.264.2e-10
GO:0009719response to endogenous stimulus 41 15.802.5e-08
GO:0009725response to hormone stimulus 32 11.149.6e-08
GO:0050896response to stimulus 76 43.941.3e-06
GO:0009605response to external stimulus 18 5.481.1e-05
GO:0006914autophagy 5 0.413.9e-05
GO:0009733response to auxin stimulus 15 4.606.3e-05
GO:0000302response to reactive oxygen species 5 0.456.8e-05
GO:0046686response to cadmium ion 7 1.068.3e-05
GO:0009739response to gibberellic acid stimulus 9 1.971.5e-04
GO:0009723response to ethylene stimulus 10 2.633.1e-04
GO:0006950response to stress 42 24.384.2e-04
GO:0009737response to abscisic acid stimulus 12 3.834.8e-04
GO:0009056catabolism 25 12.095.2e-04
GO:0010038response to metal ion 7 1.497.1e-04
GO:0009753response to jasmonic acid stimulus 9 2.427.3e-04
GO:0044248cellular catabolism 24 11.707.6e-04
GO:0009755hormone-mediated signaling 11 3.497.8e-04
GO:0009414response to water deprivation 8 2.171.5e-03
GO:0009861jasmonic acid and ethylene-dependent systemic resistance 9 2.721.6e-03
GO:0007242intracellular signaling cascade 18 8.221.7e-03
GO:0010035response to inorganic substance 7 1.741.8e-03
GO:0050789regulation of biological process 56 37.831.9e-03
GO:0009751response to salicylic acid stimulus 8 2.262.0e-03
GO:0006970response to osmotic stress 11 3.982.3e-03
GO:0006979response to oxidative stress 10 3.442.5e-03
GO:0009415response to water 8 2.352.5e-03
GO:0007582physiological process245216.802.8e-03
GO:0048366leaf development 6 1.473.5e-03
GO:0048827phyllome development 6 1.493.8e-03
GO:0009991response to extracellular stimulus 4 0.684.5e-03
GO:0006800oxygen and reactive oxygen species metabolism 10 3.764.6e-03
GO:0009611response to wounding 10 3.784.8e-03
GO:0050791regulation of physiological process 51 35.294.9e-03
GO:0006351transcription, DNA-dependent 30 18.225.3e-03
GO:0008152metabolism196170.415.8e-03
GO:0006355regulation of transcription, DNA-dependent 29 17.636.2e-03
GO:0009743response to carbohydrate stimulus 5 1.186.3e-03
GO:0010033response to organic substance 5 1.186.3e-03
GO:0048367shoot development 7 2.226.9e-03
GO:0019222regulation of metabolism 46 31.696.9e-03
GO:0007154cell communication 28 17.006.9e-03
GO:0006350transcription 46 31.857.5e-03
GO:0051244regulation of cellular physiological process 49 34.437.7e-03
GO:0050875cellular physiological process220195.277.8e-03
GO:0045449regulation of transcription 44 30.318.2e-03
GO:0050794regulation of cellular process 49 34.618.4e-03
GO:0031323regulation of cellular metabolism 45 31.409.3e-03
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism 44 30.569.3e-03
GO:0044237cellular metabolism174150.619.4e-03
GO:0009738abscisic acid mediated signaling 4 0.849.5e-03
GO:0009416response to light stimulus 12 5.509.6e-03
GO:0009987cellular process226202.089.8e-03
GO:0007568aging 5 1.319.9e-03
GO:0009651response to salt stress 9 3.581.0e-02

Cellular Component
  terms counts expected.values pvals
GO:0005634nucleus 69 37.44.6e-07
GO:0043231intracellular membrane-bound organelle213165.11.3e-06
GO:0043227membrane-bound organelle213165.21.3e-06
GO:0044424intracellular part229182.12.5e-06
GO:0005622intracellular234187.32.8e-06
GO:0043226organelle214171.51.6e-05
GO:0043229intracellular organelle214171.51.6e-05
GO:0009507chloroplast 99 70.72.2e-04
GO:0009536plastid100 72.12.9e-04
GO:0005773vacuole 6 1.31.7e-03
GO:0005737cytoplasm175147.32.8e-03

list of genes (text format)

Cluster 7 - contains 207 genes

Molecular Function
  terms counts expected.values pvals
GO:0003676nucleic acid binding41250.00064
GO:0030528transcription regulator activity28150.00089
GO:0003700transcription factor activity25140.00210
GO:0003677DNA binding29180.00526

Biological Pathway
  terms counts expected.values pvals
GO:0009737response to abscisic acid stimulus 8 1.60.00024
GO:0009725response to hormone stimulus13 4.80.00102
GO:0006350transcription2613.60.00105
GO:0051244regulation of cellular physiological process2714.70.00151
GO:0050794regulation of cellular process2714.80.00163
GO:0006970response to osmotic stress 7 1.70.00164
GO:0046907intracellular transport11 3.90.00178
GO:0051649establishment of cellular localization11 3.90.00192
GO:0051641cellular localization11 3.90.00196
GO:0050791regulation of physiological process2715.10.00215
GO:0045449regulation of transcription2412.90.00248
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolism3420.90.00273
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism2413.10.00275
GO:0050789regulation of biological process2816.20.00285
GO:0031323regulation of cellular metabolism2413.40.00388
GO:0019222regulation of metabolism2413.50.00436
GO:0015031protein transport 8 2.80.00692
GO:0006886intracellular protein transport 7 2.20.00748
GO:0045184establishment of protein localization 8 2.90.00842
GO:0008104protein localization 8 2.90.00842
GO:0007242intracellular signaling cascade 9 3.50.00894

Cellular Component
  terms counts expected.values pvals
GO:0005634nucleus 31160.00042
GO:0005622intracellular100820.00536

list of genes (text format)

Cluster 8 - contains 537 genes

Molecular Function
  terms counts expected.values pvals
GO:0008270zinc ion binding 40 20.977.5e-05
GO:0003702RNA polymerase II transcription factor activity 4 0.511.5e-03
GO:0003723RNA binding 20 10.002.7e-03
GO:0003676nucleic acid binding 86 64.663.2e-03
GO:0008134transcription factor binding 4 0.643.5e-03
GO:0003682chromatin binding 4 0.694.7e-03
GO:0046914transition metal ion binding 45 30.335.3e-03
GO:0005515protein binding 52 36.837.4e-03
GO:0005488binding184159.499.9e-03

Biological Pathway
  terms counts expected.values pvals
GO:0016192vesicle-mediated transport112.810.00012
GO:0006352transcription initiation 50.760.00086
GO:0048193Golgi vesicle transport 61.240.00142
GO:0016049cell growth 93.060.00368
GO:0008361regulation of cell size 93.170.00456
GO:0048522positive regulation of cellular process 51.190.00652
GO:0051242positive regulation of cellular physiological process 51.190.00652

Cellular Component
  terms counts expected.values pvals
GO:0008372cellular component unknown208161.765.9e-06
GO:0016604nuclear body 4 0.552.0e-03
GO:0044451nucleoplasm part 7 1.993.7e-03
GO:0005654nucleoplasm 7 2.014.0e-03
GO:0005634nucleus 59 42.586.5e-03

list of genes (text format)

Cluster 9 - contains 457 genes

Molecular Function
  terms counts expected.values pvals
GO:0016538cyclin-dependent protein kinase regulator activity 8 0.481.3e-08
GO:0019887protein kinase regulator activity 8 0.755.7e-07
GO:0019207kinase regulator activity 8 0.777.3e-07
GO:0003824catalytic activity183143.102.7e-05
GO:0016740transferase activity 76 49.719.9e-05
GO:0030234enzyme regulator activity 15 4.891.3e-04
GO:0004693cyclin-dependent protein kinase activity 5 0.602.7e-04
GO:0003777microtubule motor activity 7 1.415.1e-04
GO:0003774motor activity 7 1.741.8e-03
GO:0016772transferase activity, transferring phosphorus-containing groups 44 29.635.5e-03
GO:0017076purine nucleotide binding 45 30.736.5e-03
GO:0008168methyltransferase activity 8 2.786.8e-03
GO:0016759cellulose synthase activity 4 0.777.1e-03
GO:0004674protein serine/threonine kinase activity 25 14.757.4e-03
GO:0016741transferase activity, transferring one-carbon groups 8 2.827.5e-03
GO:0008757S-adenosylmethionine-dependent methyltransferase activity 5 1.288.9e-03

Biological Pathway
  terms counts expected.values pvals
GO:0006334nucleosome assembly 16 1.244.8e-14
GO:0031497chromatin assembly 17 1.496.7e-14
GO:0006259DNA metabolism 33 6.847.4e-14
GO:0006323DNA packaging 21 2.571.0e-13
GO:0006325establishment and/or maintenance of chromatin architecture 21 2.571.0e-13
GO:0006333chromatin assembly or disassembly 18 1.801.5e-13
GO:0051276chromosome organization and biogenesis 22 2.972.2e-13
GO:0007001chromosome organization and biogenesis (sensu Eukaryota) 21 2.733.5e-13
GO:0006461protein complex assembly 17 1.915.4e-12
GO:0006996organelle organization and biogenesis 37 11.212.1e-10
GO:0007049cell cycle 16 2.627.6e-09
GO:0016043cell organization and biogenesis 53 23.311.8e-08
GO:0000074regulation of progression through cell cycle 12 1.669.0e-08
GO:0051726regulation of cell cycle 12 1.669.0e-08
GO:0009987cellular process247198.165.3e-07
GO:0006260DNA replication 11 1.801.7e-06
GO:0007582physiological process256212.596.7e-06
GO:0007017microtubule-based process 10 1.912.0e-05
GO:0006261DNA-dependent DNA replication 7 0.892.5e-05
GO:0050875cellular physiological process232191.482.8e-05
GO:0007010cytoskeleton organization and biogenesis 13 3.515.3e-05
GO:0043170macromolecule metabolism117 84.516.8e-05
GO:0043283biopolymer metabolism 75 50.392.5e-04
GO:0007267cell-cell signaling 4 0.427.1e-04
GO:0007154cell communication 31 16.677.1e-04
GO:0007018microtubule-based movement 6 1.201.2e-03
GO:0044238primary metabolism163134.611.6e-03
GO:0007167enzyme linked receptor protein signaling pathway 9 2.842.2e-03
GO:0007169transmembrane receptor protein tyrosine kinase signaling pathway 9 2.842.2e-03
GO:0008152metabolism194167.113.7e-03
GO:0000278mitotic cell cycle 4 0.643.7e-03
GO:0007165signal transduction 27 15.564.0e-03
GO:0030705cytoskeleton-dependent intracellular transport 6 1.534.3e-03
GO:0007264small GTPase mediated signal transduction 6 1.646.0e-03
GO:0044237cellular metabolism172147.686.8e-03
GO:0046907intracellular transport 17 8.868.2e-03
GO:0019438aromatic compound biosynthesis 8 2.898.5e-03
GO:0051649establishment of cellular localization 17 8.959.0e-03
GO:0006725aromatic compound metabolism 12 5.469.1e-03
GO:0051641cellular localization 17 8.979.2e-03

Cellular Component
  terms counts expected.values pvals
GO:0000785chromatin 18 1.526.7e-15
GO:0000786nucleosome 16 1.151.2e-14
GO:0044427chromosomal part 18 2.082.1e-12
GO:0005694chromosome 19 2.814.9e-11
GO:0043228non-membrane-bound organelle 38 13.942.4e-08
GO:0043232intracellular non-membrane-bound organelle 38 13.942.4e-08
GO:0012505endomembrane system113 73.749.8e-07
GO:0016020membrane158114.872.5e-06
GO:0031225anchored to membrane 17 4.533.3e-06
GO:0044464cell part325282.463.8e-06
GO:0005623cell325282.463.8e-06
GO:0031224intrinsic to membrane 31 14.698.1e-05
GO:0015630microtubule cytoskeleton 10 2.391.4e-04
GO:0044422organelle part 48 28.412.6e-04
GO:0044446intracellular organelle part 48 28.412.6e-04
GO:0005856cytoskeleton 11 3.254.3e-04
GO:0043234protein complex 44 26.406.2e-04
GO:0044430cytoskeletal part 10 2.876.3e-04
GO:0005875microtubule associated complex 6 1.352.2e-03
GO:0005618cell wall 11 4.153.2e-03
GO:0005730nucleolus 6 1.463.3e-03
GO:0030312external encapsulating structure 11 4.243.7e-03
GO:0009524phragmoplast 4 0.735.8e-03
GO:0005634nucleus 53 37.406.2e-03
GO:0044425membrane part 32 20.066.4e-03

list of genes (text format)

Cluster 10 - contains 111 genes

Molecular Function
  terms counts expected.values pvals
GO:0005215transporter activity135.50.0035

Biological Pathway
  terms counts expected.values pvals
GO:0006260DNA replication 4 0.410.00076
GO:0044271nitrogen compound biosynthesis 5 0.840.00154
GO:0050875cellular physiological process5843.600.00178
GO:0007582physiological process6248.410.00281
GO:0019748secondary metabolism 6 1.500.00390
GO:0009266response to temperature stimulus 5 1.050.00409
GO:0009987cellular process5845.130.00470
GO:0006810transport18 9.370.00488
GO:0051179localization18 9.430.00522
GO:0051234establishment of localization18 9.430.00522
GO:0006807nitrogen compound metabolism 6 1.790.00924

Cellular Component
  terms counts expected.values pvals
GO:0031224intrinsic to membrane12 3.40.00015
GO:0016021integral to membrane 9 2.30.00057
GO:0044425membrane part13 4.70.00075
GO:0016020membrane4026.70.00249

list of genes (text format)

Cluster 11 - contains 501 genes

Molecular Function
  terms counts expected.values pvals
GO:0003735structural constituent of ribosome907.184.0e-74
GO:0005198structural molecule activity909.641.1e-61
GO:0015450protein translocase activity 70.995.0e-05
GO:0003723RNA binding229.422.2e-04
GO:0008565protein transporter activity 92.651.4e-03
GO:0015405P-P-bond-hydrolysis-driven transporter activity 82.463.3e-03
GO:0015399primary active transporter activity 82.483.5e-03
GO:0016835carbon-oxygen lyase activity 82.634.9e-03
GO:0016763transferase activity, transferring pentosyl groups 40.704.9e-03
GO:0016836hydro-lyase activity 61.615.5e-03

Biological Pathway
  terms counts expected.values pvals
GO:0044249cellular biosynthesis144 41.841.2e-42
GO:0006412protein biosynthesis100 20.939.7e-41
GO:0009058biosynthesis147 45.968.0e-40
GO:0009059macromolecule biosynthesis101 26.012.7e-33
GO:0042254ribosome biogenesis and assembly 39 3.201.0e-31
GO:0007028cytoplasm organization and biogenesis 39 3.201.0e-31
GO:0007046ribosome biogenesis 34 2.904.2e-27
GO:0044267cellular protein metabolism129 63.795.1e-16
GO:0019538protein metabolism132 66.165.9e-16
GO:0006996organelle organization and biogenesis 48 12.326.4e-16
GO:0044260cellular macromolecule metabolism130 65.872.6e-15
GO:0044237cellular metabolism241162.301.1e-14
GO:0043170macromolecule metabolism159 92.871.8e-13
GO:0044238primary metabolism219147.931.3e-12
GO:0008152metabolism256183.651.9e-12
GO:0050875cellular physiological process275210.443.3e-10
GO:0009987cellular process278217.784.1e-09
GO:0007582physiological process293233.645.2e-09
GO:0016043cell organization and biogenesis 57 25.621.1e-08
GO:0044271nitrogen compound biosynthesis 17 4.056.7e-07
GO:0006520amino acid metabolism 22 6.598.6e-07
GO:0009309amine biosynthesis 16 3.731.1e-06
GO:0008652amino acid biosynthesis 15 3.341.3e-06
GO:0006519amino acid and derivative metabolism 27 9.691.8e-06
GO:0009308amine metabolism 23 7.642.9e-06
GO:0046148pigment biosynthesis 9 1.346.6e-06
GO:0006807nitrogen compound metabolism 24 8.667.3e-06
GO:0009112nucleobase metabolism 6 0.518.1e-06
GO:0006144purine base metabolism 5 0.329.2e-06
GO:0009113purine base biosynthesis 4 0.171.2e-05
GO:0046112nucleobase biosynthesis 5 0.341.4e-05
GO:0009075histidine family amino acid metabolism 4 0.202.3e-05
GO:0009076histidine family amino acid biosynthesis 4 0.202.3e-05
GO:0000105histidine biosynthesis 4 0.202.3e-05
GO:0006547histidine metabolism 4 0.202.3e-05
GO:0042440pigment metabolism 9 1.562.4e-05
GO:0019752carboxylic acid metabolism 28 12.516.6e-05
GO:0006082organic acid metabolism 28 12.567.1e-05
GO:0043037translation 12 3.542.3e-04
GO:0006414translational elongation 5 0.592.4e-04
GO:0006626protein targeting to mitochondrion 4 0.416.5e-04
GO:0009117nucleotide metabolism 10 2.957.7e-04
GO:0046483heterocycle metabolism 11 3.599.7e-04
GO:0006725aromatic compound metabolism 15 6.001.1e-03
GO:0009066aspartate family amino acid metabolism 6 1.221.3e-03
GO:0015979photosynthesis 8 2.372.6e-03
GO:0006779porphyrin biosynthesis 5 1.003.1e-03
GO:0006605protein targeting 7 2.125.4e-03
GO:0019748secondary metabolism 15 7.226.3e-03
GO:0006163purine nucleotide metabolism 5 1.206.7e-03
GO:0006164purine nucleotide biosynthesis 5 1.206.7e-03
GO:0009165nucleotide biosynthesis 6 1.717.2e-03
GO:0006778porphyrin metabolism 5 1.227.3e-03

Cellular Component
  terms counts expected.values pvals
GO:0005840ribosome 90 7.461.8e-72
GO:0030529ribonucleoprotein complex 95 8.704.5e-72
GO:0043228non-membrane-bound organelle105 15.644.3e-57
GO:0043232intracellular non-membrane-bound organelle105 15.644.3e-57
GO:0005737cytoplasm313165.274.2e-44
GO:0044444cytoplasmic part305158.469.2e-44
GO:0043234protein complex117 29.622.3e-39
GO:0044445cytosolic part 42 3.029.6e-37
GO:0005830cytosolic ribosome (sensu Eukaryota) 39 2.587.1e-36
GO:0043226organelle319192.462.6e-32
GO:0043229intracellular organelle319192.462.6e-32
GO:0044424intracellular part330204.367.1e-32
GO:0005622intracellular330210.113.5e-29
GO:0005829cytosol 46 6.072.9e-27
GO:0044422organelle part 87 31.875.4e-18
GO:0044446intracellular organelle part 87 31.875.4e-18
GO:0016282eukaryotic 43S preinitiation complex 17 1.412.1e-14
GO:0005843cytosolic small ribosomal subunit (sensu Eukaryota) 15 1.193.4e-13
GO:0016283eukaryotic 48S initiation complex 15 1.193.4e-13
GO:0015934large ribosomal subunit 16 1.444.9e-13
GO:0015935small ribosomal subunit 17 1.832.4e-12
GO:0009536plastid141 80.933.9e-12
GO:0009507chloroplast139 79.344.0e-12
GO:0044464cell part383316.941.0e-11
GO:0005623cell383316.941.0e-11
GO:0043231intracellular membrane-bound organelle249185.281.5e-09
GO:0043227membrane-bound organelle249185.331.6e-09
GO:0043233organelle lumen 22 6.304.0e-07
GO:0031974membrane-enclosed lumen 22 6.304.0e-07
GO:0031970organelle envelope lumen 4 0.202.4e-05
GO:0005758mitochondrial intermembrane space 4 0.202.4e-05
GO:0031090organelle membrane 31 13.762.4e-05
GO:0005730nucleolus 8 1.642.2e-04
GO:0044429mitochondrial part 13 4.293.9e-04
GO:0044452nucleolar part 5 0.643.9e-04
GO:0005732small nucleolar ribonucleoprotein complex 5 0.643.9e-04
GO:0005739mitochondrion 89 63.154.5e-04
GO:0044434chloroplast part 20 9.671.9e-03
GO:0009534thylakoid (sensu Viridiplantae) 16 7.092.2e-03
GO:0031976plastid thylakoid 16 7.092.2e-03
GO:0044436thylakoid part 16 7.112.3e-03
GO:0031984organelle subcompartment 16 7.112.3e-03
GO:0009535thylakoid membrane (sensu Viridiplantae) 14 6.003.0e-03
GO:0044435plastid part 21 10.813.0e-03
GO:0042651thylakoid membrane 14 6.023.1e-03
GO:0009579thylakoid 16 7.393.3e-03
GO:0005740mitochondrial envelope 10 3.623.5e-03
GO:0031967organelle envelope 14 6.395.2e-03
GO:0031975envelope 14 6.395.2e-03
GO:0005743mitochondrial inner membrane 8 2.786.8e-03
GO:0031966mitochondrial membrane 9 3.407.2e-03
GO:0009543thylakoid lumen (sensu Viridiplantae) 6 1.717.2e-03
GO:0031977thylakoid lumen 6 1.717.2e-03
GO:0031978plastid thylakoid lumen 6 1.717.2e-03
GO:0031981nuclear lumen 9 3.529.0e-03
GO:0019866organelle inner membrane 9 3.549.4e-03

list of genes (text format)

Cluster 12 - contains 130 genes

Molecular Function
  terms counts expected.values pvals
GO:0003735structural constituent of ribosome71.80.0025

Biological Pathway
  terms counts expected.values pvals
GO:0042254ribosome biogenesis and assembly 5 0.790.0012
GO:0007028cytoplasm organization and biogenesis 5 0.790.0012
GO:0009059macromolecule biosynthesis14 6.440.0049
GO:0006412protein biosynthesis12 5.190.0057
GO:0007046ribosome biogenesis 4 0.720.0059
GO:0044249cellular biosynthesis1910.370.0068
GO:0009058biosynthesis2011.390.0087

Cellular Component
  terms counts expected.values pvals
GO:0044422organelle part208.000.00013
GO:0044446intracellular organelle part208.000.00013
GO:0030529ribonucleoprotein complex 92.180.00035
GO:0043228non-membrane-bound organelle113.930.00195
GO:0043232intracellular non-membrane-bound organelle113.930.00195
GO:0005840ribosome 71.870.00279
GO:0044445cytosolic part 40.760.00713

list of genes (text format)

Cluster 13 - contains 152 genes

Molecular Function
  terms counts expected.values pvals
GO:0005200structural constituent of cytoskeleton 5 0.189.0e-07
GO:0005525GTP binding 8 1.408.6e-05
GO:0019001guanyl nucleotide binding 8 1.439.5e-05
GO:0016829lyase activity 9 2.092.6e-04
GO:0016830carbon-carbon lyase activity 5 0.572.8e-04
GO:0003824catalytic activity6347.243.5e-03
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 4 0.674.6e-03
GO:0016853isomerase activity 5 1.248.3e-03
GO:0016614oxidoreductase activity, acting on CH-OH group of donors 4 0.818.8e-03
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds 7 2.369.6e-03

Biological Pathway
  terms counts expected.values pvals
GO:0007017microtubule-based process 7 0.664.4e-06
GO:0006996organelle organization and biogenesis14 3.883.6e-05
GO:0006364rRNA processing 4 0.271.5e-04
GO:0051179localization2914.351.7e-04
GO:0051234establishment of localization2914.351.7e-04
GO:0016072rRNA metabolism 4 0.281.8e-04
GO:0007010cytoskeleton organization and biogenesis 7 1.222.2e-04
GO:0007264small GTPase mediated signal transduction 5 0.572.6e-04
GO:0006810transport2814.253.6e-04
GO:0016043cell organization and biogenesis19 8.084.4e-04
GO:0005975carbohydrate metabolism14 5.116.1e-04
GO:0051649establishment of cellular localization10 3.101.1e-03
GO:0051641cellular localization10 3.111.2e-03
GO:0007582physiological process9173.672.0e-03
GO:0046907intracellular transport 9 3.073.8e-03
GO:0044262cellular carbohydrate metabolism 9 3.094.0e-03
GO:0005996monosaccharide metabolism 5 1.074.4e-03
GO:0006091generation of precursor metabolites and energy13 5.674.5e-03
GO:0050875cellular physiological process8266.355.0e-03
GO:0006732coenzyme metabolism 5 1.125.3e-03
GO:0009987cellular process8468.675.8e-03
GO:0015031protein transport 7 2.216.8e-03
GO:0045184establishment of protein localization 7 2.288.2e-03
GO:0008104protein localization 7 2.288.2e-03
GO:0006886intracellular protein transport 6 1.789.2e-03

Cellular Component
  terms counts expected.values pvals
GO:0045298tubulin 4 0.0592.0e-07
GO:0005874microtubule 5 0.1931.2e-06
GO:0015630microtubule cytoskeleton 8 0.8011.4e-06
GO:0005856cytoskeleton 9 1.0901.5e-06
GO:0044430cytoskeletal part 7 0.9645.3e-05
GO:0012505endomembrane system 4224.7522.5e-04
GO:0000178exosome (RNase complex) 4 0.3785.5e-04
GO:0016020membrane 5438.5583.0e-03
GO:0044464cell part10994.8176.4e-03
GO:0005623cell10994.8176.4e-03

list of genes (text format)

Cluster 14 - contains 279 genes

Molecular Function
  terms counts expected.values pvals
GO:0008092cytoskeletal protein binding50.980.003

Biological Pathway
  terms counts expected.values pvals
GO:0009725response to hormone stimulus17 6.620.00038
GO:0043284biopolymer biosynthesis 6 0.970.00042
GO:0000271polysaccharide biosynthesis 6 0.970.00042
GO:0009628response to abiotic stimulus3317.770.00042
GO:0044264cellular polysaccharide metabolism 6 1.140.00101
GO:0042221response to chemical stimulus2412.050.00105
GO:0007017microtubule-based process 6 1.160.00107
GO:0005976polysaccharide metabolism 6 1.170.00114
GO:0009755hormone-mediated signaling 8 2.070.00116
GO:0007010cytoskeleton organization and biogenesis 8 2.130.00137
GO:0030243cellulose metabolism 4 0.500.00149
GO:0030244cellulose biosynthesis 4 0.500.00149
GO:0009664cell wall organization and biogenesis (sensu Magnoliophyta) 6 1.240.00152
GO:0042546cell wall biosynthesis 5 0.850.00158
GO:0009250glucan biosynthesis 5 0.860.00170
GO:0009832cell wall biosynthesis (sensu Magnoliophyta) 4 0.540.00200
GO:0008202steroid metabolism 4 0.590.00285
GO:0006073glucan metabolism 5 1.040.00382
GO:0016043cell organization and biogenesis2514.130.00410
GO:0006886intracellular protein transport 9 3.120.00430
GO:0016051carbohydrate biosynthesis 8 2.840.00793
GO:0009737response to abscisic acid stimulus 7 2.270.00804
GO:0009414response to water deprivation 5 1.290.00962

Cellular Component
  terms counts expected.values pvals
GO:0016020membrane9767.950.00004
GO:0005794Golgi apparatus 7 1.080.00011
GO:0030135coated vesicle 5 0.500.00013
GO:0012505endomembrane system6743.620.00014
GO:0016023cytoplasmic membrane-bound vesicle 5 0.570.00026
GO:0031410cytoplasmic vesicle 5 0.570.00026
GO:0031982vesicle 5 0.590.00029
GO:0031988membrane-bound vesicle 5 0.590.00029
GO:0005798Golgi-associated vesicle 4 0.350.00039
GO:0048475coated membrane 4 0.380.00052
GO:0030120vesicle coat 4 0.380.00052
GO:0030117membrane coat 4 0.380.00052
GO:0030662coated vesicle membrane 4 0.390.00060
GO:0030659cytoplasmic vesicle membrane 4 0.390.00060
GO:0012506vesicle membrane 4 0.410.00068
GO:0044433cytoplasmic vesicle part 4 0.420.00077
GO:0044431Golgi apparatus part 5 0.840.00149
GO:0044425membrane part2311.860.00192
GO:0005783endoplasmic reticulum 6 1.350.00233
GO:0031224intrinsic to membrane18 8.690.00295
GO:0030312external encapsulating structure 8 2.510.00383

list of genes (text format)

Cluster 15 - contains 192 genes

Molecular Function
  terms counts expected.values pvals
GO:0003824catalytic activity8460.940.00023
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors 4 0.430.00090

Biological Pathway
  terms counts expected.values pvals
GO:0006635fatty acid beta-oxidation 4 0.148.6e-06
GO:0007031peroxisome organization and biogenesis 4 0.161.5e-05
GO:0019395fatty acid oxidation 4 0.171.9e-05
GO:0051186cofactor metabolism10 1.942.6e-05
GO:0005982starch metabolism 4 0.226.3e-05
GO:0005975carbohydrate metabolism17 6.091.3e-04
GO:0044262cellular carbohydrate metabolism12 3.693.5e-04
GO:0006732coenzyme metabolism 7 1.333.9e-04
GO:0051188cofactor biosynthesis 6 1.046.1e-04
GO:0044249cellular biosynthesis2915.749.1e-04
GO:0019752carboxylic acid metabolism13 4.719.2e-04
GO:0009058biosynthesis3117.299.2e-04
GO:0006082organic acid metabolism13 4.739.5e-04
GO:0006092main pathways of carbohydrate metabolism 6 1.171.2e-03
GO:0006725aromatic compound metabolism 8 2.262.0e-03
GO:0015980energy derivation by oxidation of organic compounds 7 1.812.3e-03
GO:0046483heterocycle metabolism 6 1.352.4e-03
GO:0043170macromolecule metabolism5034.933.6e-03
GO:0006767water-soluble vitamin metabolism 4 0.633.7e-03
GO:0008152metabolism8669.085.0e-03
GO:0009117nucleotide metabolism 5 1.115.2e-03
GO:0006073glucan metabolism 4 0.715.5e-03
GO:0006766vitamin metabolism 4 0.726.0e-03
GO:0044264cellular polysaccharide metabolism 4 0.787.8e-03
GO:0044248cellular catabolism11 4.748.3e-03
GO:0006605protein targeting 4 0.808.4e-03
GO:0005976polysaccharide metabolism 4 0.808.4e-03
GO:0046164alcohol catabolism 4 0.839.5e-03

Cellular Component
  terms counts expected.values pvals
GO:0005737cytoplasm 9562.585.2e-07
GO:0009536plastid 5730.641.0e-06
GO:0009507chloroplast 5630.041.2e-06
GO:0044444cytoplasmic part 9060.002.7e-06
GO:0044435plastid part 16 4.093.8e-06
GO:0044434chloroplast part 15 3.664.3e-06
GO:0005777peroxisome 6 0.477.1e-06
GO:0042579microbody 6 0.488.0e-06
GO:0043231intracellular membrane-bound organelle 9870.161.8e-05
GO:0043227membrane-bound organelle 9870.181.8e-05
GO:0043226organelle 9972.885.7e-05
GO:0043229intracellular organelle 9972.885.7e-05
GO:0044424intracellular part10377.388.3e-05
GO:0005622intracellular10579.569.4e-05
GO:0009535thylakoid membrane (sensu Viridiplantae) 9 2.274.8e-04
GO:0042651thylakoid membrane 9 2.285.0e-04
GO:0009941chloroplast envelope 5 0.707.0e-04
GO:0009526plastid envelope 5 0.771.0e-03
GO:0009534thylakoid (sensu Viridiplantae) 9 2.681.6e-03
GO:0031976plastid thylakoid 9 2.681.6e-03
GO:0044436thylakoid part 9 2.691.6e-03
GO:0031984organelle subcompartment 9 2.691.6e-03
GO:0009579thylakoid 9 2.802.1e-03
GO:0031090organelle membrane 13 5.212.3e-03
GO:0044422organelle part 2112.079.4e-03
GO:0044446intracellular organelle part 2112.079.4e-03

list of genes (text format)

Cluster 16 - contains 305 genes

Molecular Function
  terms counts expected.values pvals
GO:0003824catalytic activity12993.806.6e-06
GO:0004177aminopeptidase activity 4 0.261.1e-04
GO:0008233peptidase activity 17 6.533.3e-04
GO:0016491oxidoreductase activity 3017.011.8e-03
GO:0016829lyase activity 11 4.153.2e-03
GO:0008238exopeptidase activity 5 1.054.1e-03
GO:0015103inorganic anion transporter activity 4 0.664.3e-03
GO:0016830carbon-carbon lyase activity 5 1.145.7e-03
GO:0016787hydrolase activity 4531.016.6e-03

Biological Pathway
  terms counts expected.values pvals
GO:0009657plastid organization and biogenesis 7 0.705.8e-06
GO:0019752carboxylic acid metabolism 21 7.502.3e-05
GO:0006082organic acid metabolism 21 7.532.4e-05
GO:0006732coenzyme metabolism 10 2.125.5e-05
GO:0009108coenzyme biosynthesis 7 1.016.6e-05
GO:0051186cofactor metabolism 12 3.086.7e-05
GO:0006508proteolysis 20 8.132.1e-04
GO:0006510ATP-dependent proteolysis 4 0.343.2e-04
GO:0009309amine biosynthesis 9 2.244.2e-04
GO:0008152metabolism136110.027.6e-04
GO:0044271nitrogen compound biosynthesis 9 2.437.7e-04
GO:0006807nitrogen compound metabolism 14 5.197.7e-04
GO:0006752group transfer coenzyme metabolism 5 0.738.0e-04
GO:0007582physiological process165139.971.1e-03
GO:0051188cofactor biosynthesis 7 1.651.4e-03
GO:0009308amine metabolism 12 4.572.3e-03
GO:0009069serine family amino acid metabolism 4 0.582.7e-03
GO:0008652amino acid biosynthesis 7 2.004.0e-03
GO:0009814defense response to pathogen, incompatible interaction 8 2.675.6e-03
GO:0006519amino acid and derivative metabolism 13 5.805.8e-03
GO:0006520amino acid metabolism 10 3.956.6e-03

Cellular Component
  terms counts expected.values pvals
GO:0043231intracellular membrane-bound organelle156110.472.8e-08
GO:0043227membrane-bound organelle156110.502.8e-08
GO:0043226organelle157114.752.6e-07
GO:0043229intracellular organelle157114.752.6e-07
GO:0005622intracellular165125.281.3e-06
GO:0005737cytoplasm137 98.541.6e-06
GO:0031967organelle envelope 16 3.811.6e-06
GO:0031975envelope 16 3.811.6e-06
GO:0044424intracellular part160121.853.2e-06
GO:0044444cytoplasmic part131 94.484.1e-06
GO:0019866organelle inner membrane 10 2.115.4e-05
GO:0009536plastid 74 48.256.9e-05
GO:0042170plastid membrane 6 0.751.0e-04
GO:0009507chloroplast 72 47.311.2e-04
GO:0009526plastid envelope 7 1.212.1e-04
GO:0044429mitochondrial part 10 2.562.6e-04
GO:0005740mitochondrial envelope 9 2.163.3e-04
GO:0031969chloroplast membrane 5 0.685.7e-04
GO:0031090organelle membrane 19 8.206.4e-04
GO:0044434chloroplast part 15 5.767.4e-04
GO:0044435plastid part 16 6.448.2e-04
GO:0009706chloroplast inner membrane 4 0.438.3e-04
GO:0005777peroxisome 5 0.748.4e-04
GO:0009941chloroplast envelope 6 1.118.5e-04
GO:0042579microbody 5 0.759.2e-04
GO:0009528plastid inner membrane 4 0.449.5e-04
GO:0031966mitochondrial membrane 8 2.021.0e-03
GO:0044464cell part213188.971.2e-03
GO:0005623cell213188.971.2e-03
GO:0005739mitochondrion 55 37.662.3e-03
GO:0044422organelle part 31 19.005.0e-03
GO:0044446intracellular organelle part 31 19.005.0e-03
GO:0005743mitochondrial inner membrane 6 1.666.4e-03

list of genes (text format)

Cluster 17 - contains 603 genes

Molecular Function
  terms counts expected.values pvals
GO:0004812aminoacyl-tRNA ligase activity 15 1.299.7e-13
GO:0016875ligase activity, forming carbon-oxygen bonds 15 1.299.7e-13
GO:0016876ligase activity, forming aminoacyl-tRNA and related compounds 15 1.299.7e-13
GO:0005198structural molecule activity 38 11.205.3e-11
GO:0003735structural constituent of ribosome 32 8.348.2e-11
GO:0016853isomerase activity 20 4.797.2e-08
GO:0008462endopeptidase Clp activity 5 0.251.9e-06
GO:0016859cis-trans isomerase activity 9 1.481.5e-05
GO:0016874ligase activity 22 8.373.9e-05
GO:0003723RNA binding 26 10.954.6e-05
GO:0003755peptidyl-prolyl cis-trans isomerase activity 8 1.469.1e-05
GO:0003824catalytic activity223181.799.8e-05
GO:0016884carbon-nitrogen ligase activity, with glutamine as amido-N-donor 4 0.281.1e-04
GO:0008237metallopeptidase activity 9 1.991.6e-04
GO:0008483transaminase activity 7 1.232.0e-04
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 10 2.582.5e-04
GO:0016614oxidoreductase activity, acting on CH-OH group of donors 11 3.112.8e-04
GO:0016769transferase activity, transferring nitrogenous groups 7 1.323.1e-04
GO:0004222metalloendopeptidase activity 6 1.066.0e-04
GO:0016866intramolecular transferase activity 6 1.097.0e-04
GO:0008236serine-type peptidase activity 12 4.129.0e-04
GO:0016741transferase activity, transferring one-carbon groups 11 3.589.5e-04
GO:0004252serine-type endopeptidase activity 9 2.581.1e-03
GO:0016836hydro-lyase activity 7 1.882.6e-03
GO:0008168methyltransferase activity 10 3.532.9e-03
GO:0005527macrolide binding 4 0.623.0e-03
GO:0005528FK506 binding 4 0.623.0e-03
GO:0016835carbon-oxygen lyase activity 9 3.053.5e-03
GO:0008144drug binding 4 0.674.1e-03
GO:0016810hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 7 2.074.6e-03
GO:0016811hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides 5 1.125.0e-03
GO:0004175endopeptidase activity 16 7.785.4e-03
GO:0008233peptidase activity 22 12.668.9e-03

Biological Pathway
  terms counts expected.values pvals
GO:0009058biosynthesis121 52.484.9e-19
GO:0044249cellular biosynthesis113 47.771.5e-18
GO:0006399tRNA metabolism 23 2.262.2e-17
GO:0006520amino acid metabolism 39 7.522.6e-17
GO:0019752carboxylic acid metabolism 52 14.296.5e-16
GO:0006082organic acid metabolism 52 14.357.6e-16
GO:0006807nitrogen compound metabolism 42 9.892.2e-15
GO:0009308amine metabolism 39 8.724.2e-15
GO:0006418tRNA aminoacylation for protein translation 16 1.361.5e-13
GO:0043038amino acid activation 16 1.361.5e-13
GO:0043039tRNA aminoacylation 16 1.361.5e-13
GO:0043037translation 25 4.042.6e-13
GO:0006519amino acid and derivative metabolism 40 11.062.1e-12
GO:0046483heterocycle metabolism 22 4.091.3e-10
GO:0016070RNA metabolism 30 7.974.9e-10
GO:0006779porphyrin biosynthesis 12 1.147.3e-10
GO:0006412protein biosynthesis 57 23.901.0e-09
GO:0009790embryonic development 27 6.961.9e-09
GO:0051186cofactor metabolism 24 5.885.6e-09
GO:0006778porphyrin metabolism 12 1.398.9e-09
GO:0009793embryonic development (sensu Magnoliophyta) 25 6.529.7e-09
GO:0009059macromolecule biosynthesis 63 29.701.2e-08
GO:0048316seed development 25 7.024.3e-08
GO:0008652amino acid biosynthesis 18 3.825.0e-08
GO:0048608reproductive structure development 25 7.105.4e-08
GO:0009657plastid organization and biogenesis 11 1.346.3e-08
GO:0009658chloroplast organization and biogenesis 9 0.848.0e-08
GO:0051188cofactor biosynthesis 16 3.159.6e-08
GO:0009309amine biosynthesis 18 4.262.7e-07
GO:0044271nitrogen compound biosynthesis 18 4.629.2e-07
GO:0048481ovule development 7 0.611.5e-06
GO:0000003reproduction 26 9.222.2e-06
GO:0046148pigment biosynthesis 10 1.532.4e-06
GO:0042440pigment metabolism 10 1.781.0e-05
GO:0048440carpel development 7 0.811.1e-05
GO:0048467gynoecium development 7 0.892.3e-05
GO:0008152metabolism255209.712.4e-05
GO:0006414translational elongation 6 0.674.0e-05
GO:0044237cellular metabolism227185.337.1e-05
GO:0008033tRNA processing 6 0.811.2e-04
GO:0048438floral whorl development 7 1.171.4e-04
GO:0009072aromatic amino acid family metabolism 7 1.232.0e-04
GO:0007275development 45 25.802.1e-04
GO:0019538protein metabolism105 75.552.2e-04
GO:0043170macromolecule metabolism139106.052.4e-04
GO:0006457protein folding 15 5.262.7e-04
GO:0015995chlorophyll biosynthesis 5 0.612.9e-04
GO:0042254ribosome biogenesis and assembly 12 3.653.0e-04
GO:0007028cytoplasm organization and biogenesis 12 3.653.0e-04
GO:0044267cellular protein metabolism101 72.853.3e-04
GO:0006510ATP-dependent proteolysis 5 0.643.7e-04
GO:0044260cellular macromolecule metabolism103 75.214.4e-04
GO:0009067aspartate family amino acid biosynthesis 5 0.674.5e-04
GO:0007046ribosome biogenesis 11 3.314.9e-04
GO:0009073aromatic amino acid family biosynthesis 6 1.065.9e-04
GO:0048569post-embryonic organ development 7 1.507.1e-04
GO:0048437floral organ development 7 1.507.1e-04
GO:0045036protein targeting to chloroplast 4 0.458.3e-04
GO:0015994chlorophyll metabolism 5 0.789.5e-04
GO:0016117carotenoid biosynthesis 4 0.471.1e-03
GO:0016109tetraterpenoid biosynthesis 4 0.471.1e-03
GO:0016116carotenoid metabolism 4 0.582.4e-03
GO:0016108tetraterpenoid metabolism 4 0.582.4e-03
GO:0006568tryptophan metabolism 4 0.582.4e-03
GO:0006586indolalkylamine metabolism 4 0.582.4e-03
GO:0009066aspartate family amino acid metabolism 6 1.392.6e-03
GO:0044238primary metabolism199168.932.6e-03
GO:0042430indole and derivative metabolism 4 0.704.7e-03
GO:0042434indole derivative metabolism 4 0.704.7e-03
GO:0042435indole derivative biosynthesis 4 0.704.7e-03
GO:0006766vitamin metabolism 7 2.206.4e-03
GO:0006839mitochondrial transport 5 1.206.6e-03
GO:0006396RNA processing 12 5.297.1e-03
GO:0009110vitamin biosynthesis 5 1.288.8e-03
GO:0008610lipid biosynthesis 14 6.911.0e-02

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid404 99.045.0e-179
GO:0009507chloroplast386 97.103.7e-163
GO:0044444cytoplasmic part482193.932.5e-137
GO:0005737cytoplasm488202.274.5e-135
GO:0043231intracellular membrane-bound organelle480226.751.5e-105
GO:0043227membrane-bound organelle480226.811.7e-105
GO:0043226organelle488235.551.7e-105
GO:0043229intracellular organelle488235.551.7e-105
GO:0044424intracellular part493250.11 1.8e-98
GO:0005622intracellular494257.15 4.6e-94
GO:0044435plastid part 84 13.23 2.0e-43
GO:0044464cell part522387.89 6.3e-39
GO:0005623cell522387.89 6.3e-39
GO:0044434chloroplast part 71 11.83 5.1e-35
GO:0009532plastid stroma 31 3.15 1.4e-22
GO:0009534thylakoid (sensu Viridiplantae) 48 8.68 2.6e-22
GO:0031976plastid thylakoid 48 8.68 2.6e-22
GO:0031984organelle subcompartment 48 8.71 3.0e-22
GO:0009579thylakoid 48 9.04 1.6e-21
GO:0044436thylakoid part 43 8.71 3.6e-18
GO:0044422organelle part 98 39.01 1.4e-17
GO:0044446intracellular organelle part 98 39.01 1.4e-17
GO:0009535thylakoid membrane (sensu Viridiplantae) 38 7.34 6.8e-17
GO:0042651thylakoid membrane 38 7.37 7.9e-17
GO:0009570chloroplast stroma 17 1.82 1.4e-12
GO:0031090organelle membrane 51 16.84 1.9e-12
GO:0005840ribosome 32 9.13 8.0e-10
GO:0030529ribonucleoprotein complex 34 10.65 2.7e-09
GO:0009526plastid envelope 16 2.49 2.7e-09
GO:0009941chloroplast envelope 15 2.28 6.0e-09
GO:0009508plastid chromosome 8 0.49 7.1e-09
GO:0042646plastid nucleoid 8 0.52 1.3e-08
GO:0009295nucleoid 8 0.52 1.3e-08
GO:0009840chloroplastic endopeptidase Clp complex 5 0.24 1.3e-06
GO:0009368endopeptidase Clp complex 5 0.24 1.3e-06
GO:0031967organelle envelope 23 7.83 4.2e-06
GO:0031975envelope 23 7.83 4.2e-06
GO:0043228non-membrane-bound organelle 40 19.14 9.9e-06
GO:0043232intracellular non-membrane-bound organelle 40 19.14 9.9e-06
GO:0009543thylakoid lumen (sensu Viridiplantae) 10 2.09 4.2e-05
GO:0031977thylakoid lumen 10 2.09 4.2e-05
GO:0031978plastid thylakoid lumen 10 2.09 4.2e-05
GO:0042170plastid membrane 7 1.55 8.3e-04
GO:0019866organelle inner membrane 12 4.34 1.4e-03
GO:0009528plastid inner membrane 5 0.91 1.9e-03
GO:0031969chloroplast membrane 6 1.40 2.5e-03
GO:0009547plastid ribosome 4 0.73 5.5e-03

list of genes (text format)

Cluster 18 - contains 127 genes

Molecular Function
  terms counts expected.values pvals
GO:0003824catalytic activity5539.00.0014
GO:0016491oxidoreductase activity15 7.10.0046

Biological Pathway
  terms counts expected.values pvals
GO:0006520amino acid metabolism10 1.563.7e-06
GO:0006807nitrogen compound metabolism11 2.056.5e-06
GO:0009308amine metabolism10 1.811.3e-05
GO:0006519amino acid and derivative metabolism10 2.291.0e-04
GO:0019752carboxylic acid metabolism10 2.967.6e-04
GO:0006082organic acid metabolism10 2.977.9e-04
GO:0044271nitrogen compound biosynthesis 5 0.962.8e-03
GO:0008652amino acid biosynthesis 4 0.798.2e-03
GO:0016052carbohydrate catabolism 4 0.808.4e-03
GO:0044275cellular carbohydrate catabolism 4 0.808.4e-03
GO:0008152metabolism5643.438.6e-03

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid 6620.81.4e-20
GO:0009507chloroplast 6520.42.8e-20
GO:0044444cytoplasmic part 8540.83.3e-16
GO:0005737cytoplasm 8542.55.4e-15
GO:0043226organelle 8849.51.8e-12
GO:0043229intracellular organelle 8849.51.8e-12
GO:0043231intracellular membrane-bound organelle 8547.78.1e-12
GO:0043227membrane-bound organelle 8547.78.3e-12
GO:0044424intracellular part 8952.62.5e-11
GO:0005622intracellular 9054.14.3e-11
GO:0044464cell part10681.64.5e-07
GO:0005623cell10681.64.5e-07
GO:0009579thylakoid 8 1.96.6e-04
GO:0009534thylakoid (sensu Viridiplantae) 7 1.82.4e-03
GO:0031976plastid thylakoid 7 1.82.4e-03
GO:0044436thylakoid part 7 1.82.5e-03
GO:0031984organelle subcompartment 7 1.82.5e-03
GO:0044434chloroplast part 8 2.53.6e-03
GO:0044435plastid part 8 2.86.9e-03

list of genes (text format)

Cluster 19 - contains 176 genes

Molecular Function
  terms counts expected.values pvals
GO:0016491oxidoreductase activity31 9.564.8e-09
GO:0003824catalytic activity7852.721.9e-05
GO:0016829lyase activity10 2.331.2e-04
GO:0009055electron carrier activity 7 1.842.6e-03
GO:0030508thiol-disulfide exchange intermediate activity 4 0.582.7e-03
GO:0016810hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 4 0.603.1e-03
GO:0015036disulfide oxidoreductase activity 5 1.033.8e-03
GO:0016830carbon-carbon lyase activity 4 0.643.9e-03
GO:0015035protein disulfide oxidoreductase activity 4 0.664.3e-03

Biological Pathway
  terms counts expected.values pvals
GO:0015979photosynthesis110.793.9e-10
GO:0006091generation of precursor metabolites and energy215.995.6e-07
GO:0019684photosynthesis, light reaction 60.488.3e-06
GO:0016116carotenoid metabolism 40.172.3e-05
GO:0016108tetraterpenoid metabolism 40.172.3e-05
GO:0051186cofactor metabolism 91.725.8e-05
GO:0009117nucleotide metabolism 70.985.9e-05
GO:0006767water-soluble vitamin metabolism 50.562.5e-04
GO:0019362pyridine nucleotide metabolism 40.333.4e-04
GO:0006733oxidoreduction coenzyme metabolism 40.354.0e-04
GO:0006766vitamin metabolism 50.644.6e-04
GO:0006092main pathways of carbohydrate metabolism 61.046.3e-04
GO:0043449alkene metabolism 50.759.3e-04
GO:0006732coenzyme metabolism 61.181.2e-03
GO:0042440pigment metabolism 40.521.8e-03
GO:0006118electron transport113.891.9e-03
GO:0043450alkene biosynthesis 40.562.4e-03
GO:0016096polyisoprenoid metabolism 40.603.1e-03
GO:0006721terpenoid metabolism 40.603.1e-03
GO:0042214terpene metabolism 40.613.3e-03
GO:0009416response to light stimulus 71.983.8e-03
GO:0009314response to radiation 72.004.0e-03
GO:0006007glucose catabolism 40.664.3e-03
GO:0019320hexose catabolism 40.664.3e-03
GO:0006006glucose metabolism 40.674.7e-03
GO:0046365monosaccharide catabolism 40.705.3e-03
GO:0015980energy derivation by oxidation of organic compounds 61.605.5e-03
GO:0046164alcohol catabolism 40.736.2e-03

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid 98 27.601.8e-35
GO:0009507chloroplast 96 27.061.8e-34
GO:0009579thylakoid 35 2.524.8e-30
GO:0044436thylakoid part 34 2.432.6e-29
GO:0044434chloroplast part 37 3.302.3e-28
GO:0009534thylakoid (sensu Viridiplantae) 33 2.424.5e-28
GO:0031976plastid thylakoid 33 2.424.5e-28
GO:0031984organelle subcompartment 33 2.435.0e-28
GO:0044435plastid part 37 3.691.3e-26
GO:0009535thylakoid membrane (sensu Viridiplantae) 29 2.053.5e-25
GO:0042651thylakoid membrane 29 2.053.9e-25
GO:0044444cytoplasmic part116 54.032.6e-23
GO:0005737cytoplasm116 56.361.3e-21
GO:0031090organelle membrane 31 4.694.7e-17
GO:0043231intracellular membrane-bound organelle115 63.181.5e-16
GO:0043227membrane-bound organelle115 63.201.6e-16
GO:0044424intracellular part121 69.692.7e-16
GO:0043226organelle116 65.631.1e-15
GO:0043229intracellular organelle116 65.631.1e-15
GO:0005622intracellular121 71.653.3e-15
GO:0044422organelle part 41 10.877.1e-14
GO:0044446intracellular organelle part 41 10.877.1e-14
GO:0009521photosystem 10 0.431.3e-11
GO:0009543thylakoid lumen (sensu Viridiplantae) 11 0.581.3e-11
GO:0031977thylakoid lumen 11 0.581.3e-11
GO:0031978plastid thylakoid lumen 11 0.581.3e-11
GO:0044464cell part142108.089.7e-10
GO:0005623cell142108.089.7e-10
GO:0009522photosystem I 5 0.142.3e-07
GO:0043233organelle lumen 12 2.151.8e-06
GO:0031974membrane-enclosed lumen 12 2.151.8e-06
GO:0009523photosystem II 5 0.301.1e-05
GO:0030095photosystem II (sensu Viridiplantae) 4 0.182.6e-05
GO:0042579microbody 4 0.439.0e-04
GO:0044425membrane part 16 7.674.4e-03

list of genes (text format)

Cluster 20 - contains 264 genes

Molecular Function
  terms counts expected.values pvals
GO:0016491oxidoreductase activity 3914.401.2e-08
GO:0003824catalytic activity11579.439.4e-07
GO:0016168chlorophyll binding 5 0.287.4e-06
GO:0009055electron carrier activity 12 2.782.4e-05
GO:0016638oxidoreductase activity, acting on the CH-NH2 group of donors 4 0.406.8e-04
GO:0016779nucleotidyltransferase activity 7 1.772.1e-03

Biological Pathway
  terms counts expected.values pvals
GO:0015979photosynthesis 13 1.192.0e-10
GO:0019684photosynthesis, light reaction 9 0.734.1e-08
GO:0009765photosynthesis, light harvesting 6 0.282.8e-07
GO:0009642response to light intensity 5 0.311.2e-05
GO:0006091generation of precursor metabolites and energy 24 9.071.4e-05
GO:0007582physiological process149117.871.5e-05
GO:0009657plastid organization and biogenesis 6 0.592.6e-05
GO:0009628response to abiotic stimulus 34 16.253.3e-05
GO:0009069serine family amino acid metabolism 5 0.491.3e-04
GO:0008152metabolism120 92.651.4e-04
GO:0009809lignin biosynthesis 4 0.302.0e-04
GO:0009808lignin metabolism 4 0.322.7e-04
GO:0019748secondary metabolism 12 3.643.2e-04
GO:0050896response to stimulus 41 23.893.9e-04
GO:0006519amino acid and derivative metabolism 14 4.894.2e-04
GO:0006807nitrogen compound metabolism 13 4.374.8e-04
GO:0042221response to chemical stimulus 23 11.027.0e-04
GO:0009416response to light stimulus 10 2.998.9e-04
GO:0009314response to radiation 10 3.039.7e-04
GO:0009308amine metabolism 11 3.851.8e-03
GO:0006520amino acid metabolism 10 3.321.9e-03
GO:0050875cellular physiological process128106.172.0e-03
GO:0009110vitamin biosynthesis 4 0.572.4e-03
GO:0044237cellular metabolism102 81.883.4e-03
GO:0006725aromatic compound metabolism 9 3.033.5e-03
GO:0006996organelle organization and biogenesis 14 6.224.0e-03
GO:0044271nitrogen compound biosynthesis 7 2.044.5e-03
GO:0019438aromatic compound biosynthesis 6 1.605.5e-03
GO:0009987cellular process129109.876.1e-03
GO:0008652amino acid biosynthesis 6 1.697.0e-03
GO:0010038response to metal ion 4 0.818.9e-03

Cellular Component
  terms counts expected.values pvals
GO:0009534thylakoid (sensu Viridiplantae) 41 3.717.4e-31
GO:0031976plastid thylakoid 41 3.717.4e-31
GO:0031984organelle subcompartment 41 3.728.5e-31
GO:0009579thylakoid 41 3.864.0e-30
GO:0044436thylakoid part 40 3.721.3e-29
GO:0044434chloroplast part 44 5.061.3e-28
GO:0044435plastid part 45 5.651.4e-27
GO:0009535thylakoid membrane (sensu Viridiplantae) 35 3.141.5e-26
GO:0042651thylakoid membrane 35 3.151.8e-26
GO:0009536plastid112 42.334.0e-25
GO:0009507chloroplast110 41.501.2e-24
GO:0005737cytoplasm153 86.445.4e-18
GO:0031090organelle membrane 39 7.195.5e-18
GO:0044444cytoplasmic part149 82.886.2e-18
GO:0043231intracellular membrane-bound organelle163 96.901.7e-17
GO:0043227membrane-bound organelle163 96.931.7e-17
GO:0043226organelle163100.661.1e-15
GO:0043229intracellular organelle163100.661.1e-15
GO:0005622intracellular171109.893.7e-15
GO:0044424intracellular part168106.883.9e-15
GO:0044422organelle part 54 16.678.6e-15
GO:0044446intracellular organelle part 54 16.678.6e-15
GO:0044464cell part215165.769.3e-13
GO:0005623cell215165.769.3e-13
GO:0009543thylakoid lumen (sensu Viridiplantae) 12 0.897.9e-11
GO:0031977thylakoid lumen 12 0.897.9e-11
GO:0031978plastid thylakoid lumen 12 0.897.9e-11
GO:0030095photosystem II (sensu Viridiplantae) 6 0.272.1e-07
GO:0043233organelle lumen 16 3.292.2e-07
GO:0031974membrane-enclosed lumen 16 3.292.2e-07
GO:0030076light-harvesting complex 5 0.186.4e-07
GO:0009521photosystem 7 0.664.0e-06
GO:0009523photosystem II 6 0.455.3e-06
GO:0009654oxygen evolving complex 4 0.171.8e-05
GO:0016020membrane 92 67.413.9e-04
GO:0009941chloroplast envelope 5 0.972.9e-03
GO:0009526plastid envelope 5 1.064.3e-03

list of genes (text format)