Cluster 11 | GO:0043227 | membrane-bound organelle

AT1G74560

NRP1 (NAP1-RELATED PROTEIN 1); DNA binding

AT2G45490

NA

AT3G25520

NA

AT4G28190

NA

AT5G13930

NA

AT5G56600

PFN3/PRF3 (PROFILIN 3); actin binding

AT1G22590

MADS-box family protein

AT1G25470

AP2 domain-containing transcription factor, putative

AT2G14880

SWIB complex BAF60b domain-containing protein

AT2G37470

NA

AT2G39880

NA

AT3G03110

XPO1B (exportin 1B); protein transporter

AT3G06120

NA

AT3G09480

histone H2B, putative

AT4G00480

ATMYC1 (Arabidopsis thaliana myc-related transcription factor 1); DNA binding / transcription factor

AT4G14540

CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family

AT1G65700

small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative

AT1G76300

NA

AT4G30220

small nuclear ribonucleoprotein F, putative / snRNP-F, putative / Sm protein F, putative

AT5G48870

NA

AT3G52190

PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1); nucleotide binding

AT2G46170

NA

AT1G80560

3-isopropylmalate dehydrogenase, chloroplast, putative

AT1G14980

CPN10 (CHAPERONIN 10)

AT1G49410

TOM6 (TRANSLOCASE OF THE OUTER MITOCHONDRIAL MEMBRANE 6)

AT1G50840

NA

AT1G61570

TIM13 (TIM13); protein translocase

AT1G71260

ATWHY2 (A. THALIANA WHIRLY 2); DNA binding

AT1G77750

NA

AT2G04030

CR88 (EMBRYO DEFECTIVE 1956); ATP binding

AT2G24120

NA

AT2G30970

ASP1 (ASPARTATE AMINOTRANSFERASE 1)

AT3G07770

ATP binding

AT3G13160

pentatricopeptide (PPR) repeat-containing protein

AT3G13470

chaperonin, putative

AT3G13860

chaperonin, putative

AT3G46560

TIM9 (EMBRYO DEFECTIVE 2474); protein translocase

AT4G26300

NA

AT4G31810

NA

AT5G23250

NA

AT5G23300

NA

AT5G40770

NA

AT5G46800

NA

AT5G50810

NA

AT5G55200

co-chaperone grpE protein, putative

AT1G03360

ATRRP4; exonuclease

AT1G04480

60S ribosomal protein L23 (RPL23A)

AT1G07070

60S ribosomal protein L35a (RPL35aA)

AT1G11790

prephenate dehydratase

AT1G16870

mitochondrial 28S ribosomal protein S29-related

AT1G26880

60S ribosomal protein L34 (RPL34A)

AT1G26910

60S ribosomal protein L10 (RPL10B)

AT1G30520

acyl-activating enzyme 14 (AAE14)

AT1G31860

AT-IE (Arabidopsis thaliana bifunctional HisI-HisE protein)

AT1G36310

similar to PREDICTED: similar to CG17807-PA [Rattus norve (GB:XP_001055538.1); similar to Os02g0750500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048132.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601)

AT1G50730

NA

AT1G51610

cation efflux family protein / metal tolerance protein, putative (MTPc4)

AT1G53920

GLIP5 (GDSL-motif lipase 5); carboxylic ester hydrolase

AT1G61990

mitochondrial transcription termination factor-related / mTERF-related

AT1G74260

NA

AT1G77670

NA

AT2G15690

NA

AT2G18900

transducin family protein / WD-40 repeat family protein

AT2G19750

40S ribosomal protein S30 (RPS30A)

AT2G22870

NA

AT2G25210

NA

AT2G25580

NA

AT2G33255

NA

AT2G36620

RPL24A (RIBOSOMAL PROTEIN L24); structural constituent of ribosome

AT2G40330

NA

AT3G02490

NA

AT3G05810

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26800.1); similar to Os01g0299400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042813.1); similar to Unknown protein [Oryza sativa] (GB:AAL74273.1); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993)

AT3G11090

NA

AT3G14740

PHD finger family protein

AT3G14930

HEME1; uroporphyrinogen decarboxylase

AT3G15680

zinc finger (Ran-binding) family protein

AT3G16100

AtRABG3c/AtRab7D (Arabidopsis Rab GTPase homolog G3c); GTP binding

AT3G18160

NA

AT3G18510

unknown protein

AT3G22230

60S ribosomal protein L27 (RPL27B)

AT3G28900

60S ribosomal protein L34 (RPL34C)

AT3G29230

pentatricopeptide (PPR) repeat-containing protein

AT3G46630

NA

AT3G53020

STV1 (SHORT VALVE1); structural constituent of ribosome

AT3G55160

similar to putative death receptor interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99561.1); similar to Os08g0169700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061088.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72654.1); contains InterPro domain HEAT; (InterPro:IPR000357)

AT3G57160

unknown protein

AT3G59650

NA

AT4G11175

translation initiation factor IF-1, chloroplast, putative

AT4G15000

60S ribosomal protein L27 (RPL27C)

AT4G17390

60S ribosomal protein L15 (RPL15B)

AT4G20760

short-chain dehydrogenase/reductase (SDR) family protein

AT4G26780

AR192; adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization

AT4G29390

40S ribosomal protein S30 (RPS30B)

AT4G31985

NA

AT5G06550

similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G78280.1); similar to hypothetical protein DDBDRAFT_0205230 [Dictyostelium discoideum AX4] (GB:XP_641202.1); similar to Os11g0572800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068128.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347)

AT5G15980

NA

AT5G34940

glycosyl hydrolase family 79 N-terminal domain-containing protein

AT5G47630

acyl carrier family protein / ACP family protein

AT5G48880

KAT5/PKT1/PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 1, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2); acetyl-CoA C-acyltransferase

AT5G56670

NA

AT5G61220

NA

AT5G63100

NA

AT2G47990

SWA1 (SLOW WALKER1); nucleotide binding

AT4G25630

FIB2 (FIBRILLARIN 2)

AT4G05410

NA

AT2G29540

ATRPC14 (Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit); DNA binding / DNA-directed RNA polymerase

AT3G20740

FIE (FERTILIZATION-INDEPENDENT ENDOSPERM 1); nucleotide binding / transcription factor

AT3G27820

NA

AT2G43240

nucleotide-sugar transporter

AT5G41760

nucleotide-sugar transporter

AT4G15510

calcium ion binding

AT3G01440

oxygen evolving enhancer 3 (PsbQ) family protein

AT4G28660

photosystem II reaction centre W (PsbW) family protein

AT4G02530

chloroplast thylakoid lumen protein

AT2G23670

NA

AT2G40400

NA

AT3G44020

NA

AT1G03630

POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); oxidoreductase/ protochlorophyllide reductase

AT1G54500

NA

AT2G17972

NA

AT2G36145

NA

AT2G40100

NA

AT3G04790

ribose 5-phosphate isomerase-related

AT4G34190

SEP1 (STRESS ENHANCED PROTEIN 1)

AT5G08050

NA

AT5G17170

rubredoxin family protein

AT4G36810

GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase

AT1G60600

ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase

AT5G18660

NA

AT5G20980

ATMS3 (METHIONINE SYNTHASE 3)

AT1G06380

ribosomal protein-related

AT1G08130

ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1); ATP binding / DNA ligase (ATP)

AT1G09830

NA

AT1G10230

ASK18 (ARABIDOPSIS SKP1-LIKE 18); protein binding / ubiquitin-protein ligase

AT1G10960

NA

AT1G12100

protease inhibitor/seed storage/lipid transfer protein (LTP) family protein

AT1G14580

NA

AT1G15140

NA

AT1G15250

60S ribosomal protein L37 (RPL37A)

AT1G15510

NA

AT1G28395

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33847.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89009.1)

AT1G48460

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G63040.2); similar to Os01g0704200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044004.1); similar to hypothetical protein MtrDRAFT_AC124952g33v1 [Medicago truncatula] (GB:ABE93586.1); contains domain Multidrug resistance ABC transporter MsbA, N-terminal domain (SSF90123)

AT1G48850

EMB1144 (EMBRYO DEFECTIVE 1144); chorismate synthase

AT1G53520

NA

AT1G55370

NA

AT1G56050

NA

AT1G64790

translational activator family protein

AT1G71460

pentatricopeptide (PPR) repeat-containing protein

AT1G77720

NA

AT2G17033

NA

AT2G18940

NA

AT2G20725

CAAX amino terminal protease family protein

AT2G22250

AAT/ATAAT/MEE17 (maternal effect embryo arrest 17); aspartate transaminase

AT2G24050

NA

AT2G25620

NA

AT2G27775

NA

AT2G28930

APK1B (Arabidopsis protein kinase 1B); kinase

AT2G30390

NA

AT2G33180

NA

AT2G35040

NA

AT2G36835

NA

AT2G36885

NA

AT2G37600

NA

AT2G41950

NA

AT2G45440

NA

  link publication
64Increased lysine synthesis coupled with a knockout of its catabolism synergistically boosts lysine content and also transregulates the metabolism of other amino acids in Arabidopsis seeds.THE PLANT CELL
65Molecular genetic dissection and potential manipulation of lysine metabolism in seeds.JOURNAL OF PLANT PHYSIOLOGY
66Arabidopsis loss-of-function mutant in the lysine pathway points out complex regulation mechanisms.FEBS LETTERS
67Functional rescue of a bacterial dapA auxotroph with a plant cDNA library selects for mutant clones encoding a feedback-insensitive dihydrodipicolinate synthase.THE PLANT JOURNAL
68Identification of an Arabidopsis thaliana mutant accumulating threonine resulting from mutation in a new dihydrodipicolinate synthase gene.THE PLANT JOURNAL
69The Arabidopsis thaliana dhdps gene encoding dihydrodipicolinate synthase, key enzyme of lysine biosynthesis, is expressed in a cell-specific manner.PLANT MOLECULAR BIOLOGY
70Lysine and threonine metabolism are subject to complex patterns of regulation in Arabidopsis.PLANT MOLECULAR BIOLOGY
71Isolation of a poplar and an Arabidopsis thaliana dihydrodipicolinate synthase cDNA clone.PLANT MOLECULAR BIOLOGY

AT3G02450

NA

AT3G06680

60S ribosomal protein L29 (RPL29B)

AT3G06700

60S ribosomal protein L29 (RPL29A)

AT3G07630

prephenate dehydratase family protein

AT3G09580

amine oxidase family protein

AT3G10840

NA

AT3G12685

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24350.1); similar to Acid phosphatase/vanadium-dependent haloperoxidase related [Medicago truncatula] (GB:ABE86902.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832)

AT3G12930

NA

AT3G15080

exonuclease family protein

AT3G15352

NA

AT3G16080

60S ribosomal protein L37 (RPL37C)

AT3G23940

NA

AT3G25410

NA

AT3G26710

similar to Os11g0526200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067997.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53542.1)

AT3G28460

NA

AT3G29320

glucan phosphorylase, putative

AT3G50270

transferase family protein

AT3G50920

NA

AT3G51870

mitochondrial substrate carrier family protein

AT3G52950

CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein

AT3G53580

NA

AT3G55010

phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)

AT3G56330

N2,N2-dimethylguanosine tRNA methyltransferase family protein

AT3G61770

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Os05g0534100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056147.1); similar to hypothetical protein DSY2350 [Desulfitobacterium hafniense Y51] (GB:YP_518583.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832)

AT4G00370

NA

AT4G13220

NA

AT4G14190

binding

AT4G14690

NA

AT4G14910

IGPD (Imidazoleglycerol-phosphate dehydratase)

AT4G16410

similar to Os07g0607200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060233.1); contains InterPro domain Protein of unknown function DUF751; (InterPro:IPR008470)

AT4G18520

binding

AT4G18570

proline-rich family protein

AT4G18750

pentatricopeptide (PPR) repeat-containing protein

AT4G20980

translation initiation factor

AT4G24090

NA

AT4G24830

NA

AT4G29590

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01660.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79229.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216)

AT4G31040

NA

AT4G31210

NA

AT4G32520

NA

AT4G34730

NA

AT4G34740

NA

AT4G39570

NA

AT5G02050

mitochondrial glycoprotein family protein / MAM33 family protein

AT5G02830

pentatricopeptide (PPR) repeat-containing protein

AT5G09650

NA

AT5G10690

NA

AT5G11630

similar to transcription factor [Arabidopsis thaliana] (TAIR:AT4G17310.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78369.1)

AT5G12860

NA

AT5G12900

NA

AT5G13280

AK-LYS1 (ASPARTATE KINASE 1)

AT5G15450

NA

AT5G17560

BolA-like family protein

AT5G17630

glucose-6-phosphate/phosphate translocator, putative

AT5G22390

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19260.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28434.1); similar to Os12g0155100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066192.1)

AT5G23070

NA

AT5G27440

similar to Ctp [Cucumis melo] (GB:AAO45758.1)

AT5G39980

pentatricopeptide (PPR) repeat-containing protein

AT5G40850

NA

AT5G45800

NA

AT5G47870

similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G71310.1); similar to Os03g0851500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051915.1); similar to Os09g0512800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063645.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34413.1)

AT5G48830

NA

AT5G50210

NA

AT5G60960

pentatricopeptide (PPR) repeat-containing protein

AT5G64290

NA

AT5G66950

NA

AT5G67510

NA

AT1G24280

G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3); glucose-6-phosphate 1-dehydrogenase

AT2G40300

NA

AT3G56090

NA

AT4G26900

AT-HF (Arabidopsis thaliana HisF protein)

AT4G14680

NA

AT2G36230

APG10 (ALBINO AND PALE GREEN 10); 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

AT3G10230

LYC (LYCOPENE CYCLASE)

AT4G39980

NA

AT5G49910

NA

AT1G19800

TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)

AT3G16620

ATTOC120 (Arabidopsis thaliana translocon outer complex protein 120); GTP binding / protein translocase

AT4G33520

PAA1 (metal-transporting P-type ATPase 1)

AT3G10160

NA

AT1G04070

TOM22-I (translocase of the outer mitochondrial membrane 22-I)

AT5G24650

NA

AT5G61310

cytochrome-c oxidase

AT4G32400

mitochondrial substrate carrier family protein

list of genes (text format)