GCRMA

Pattern contains 333 genes

Molecular Function
  terms counts expected.values pvals
GO:0016877ligase activity, forming carbon-sulfur bonds 4 0.350.00037
GO:0016168chlorophyll binding 4 0.370.00044
GO:0016491oxidoreductase activity3118.740.00415

Biological Pathway
  terms counts expected.values pvals
GO:0009628response to abiotic stimulus 46 21.406.6e-07
GO:0019748secondary metabolism 17 4.807.3e-06
GO:0009416response to light stimulus 15 3.941.1e-05
GO:0009314response to radiation 15 3.991.2e-05
GO:0006950response to stress 35 17.467.0e-05
GO:0009408response to heat 7 1.079.4e-05
GO:0050896response to stimulus 53 31.461.0e-04
GO:0009861jasmonic acid and ethylene-dependent systemic resistance 9 1.951.5e-04
GO:0009814defense response to pathogen, incompatible interaction 11 2.972.0e-04
GO:0007167enzyme linked receptor protein signaling pathway 9 2.072.4e-04
GO:0007169transmembrane receptor protein tyrosine kinase signaling pathway 9 2.072.4e-04
GO:0019438aromatic compound biosynthesis 9 2.112.7e-04
GO:0042221response to chemical stimulus 29 14.513.2e-04
GO:0010224response to UV-B 4 0.343.3e-04
GO:0007166cell surface receptor linked signal transduction 10 2.663.5e-04
GO:0009753response to jasmonic acid stimulus 8 1.733.5e-04
GO:0009698phenylpropanoid metabolism 8 1.774.0e-04
GO:0009611response to wounding 10 2.714.1e-04
GO:0009765photosynthesis, light harvesting 4 0.374.7e-04
GO:0009605response to external stimulus 12 3.926.1e-04
GO:0009411response to UV 5 0.706.3e-04
GO:0006725aromatic compound metabolism 12 3.997.1e-04
GO:0006979response to oxidative stress 9 2.468.5e-04
GO:0006800oxygen and reactive oxygen species metabolism 9 2.691.6e-03
GO:0046148pigment biosynthesis 5 0.891.9e-03
GO:0006720isoprenoid metabolism 7 1.782.1e-03
GO:0009699phenylpropanoid biosynthesis 6 1.362.4e-03
GO:0006575amino acid derivative metabolism 9 2.872.4e-03
GO:0006857oligopeptide transport 5 0.972.9e-03
GO:0015833peptide transport 5 0.993.1e-03
GO:0009058biosynthesis 46 30.543.1e-03
GO:0042440pigment metabolism 5 1.043.8e-03
GO:0007582physiological process178155.234.3e-03
GO:0015979photosynthesis 6 1.575.0e-03
GO:0009719response to endogenous stimulus 21 11.315.0e-03
GO:0009751response to salicylic acid stimulus 6 1.625.8e-03
GO:0044271nitrogen compound biosynthesis 8 2.695.8e-03
GO:0009110vitamin biosynthesis 4 0.756.5e-03
GO:0042398amino acid derivative biosynthesis 7 2.196.5e-03
GO:0009266response to temperature stimulus 9 3.377.0e-03
GO:0008610lipid biosynthesis 10 4.027.4e-03
GO:0042829defense response to pathogen 12 5.337.7e-03
GO:0044255cellular lipid metabolism 12 5.388.2e-03
GO:0006766vitamin metabolism 5 1.289.2e-03

Cellular Component
  terms counts expected.values pvals
GO:0044464cell part264213.502.0e-10
GO:0005623cell264213.502.0e-10
GO:0009536plastid 93 54.525.5e-08
GO:0016020membrane127 86.826.3e-07
GO:0005737cytoplasm152111.341.7e-06
GO:0044444cytoplasmic part147106.741.8e-06
GO:0031090organelle membrane 26 9.272.4e-06
GO:0009507chloroplast 86 53.452.6e-06
GO:0044435plastid part 19 7.281.5e-04
GO:0044422organelle part 39 21.472.2e-04
GO:0044446intracellular organelle part 39 21.472.2e-04
GO:0044434chloroplast part 17 6.513.2e-04
GO:0005622intracellular172141.543.6e-04
GO:0044424intracellular part168137.673.8e-04
GO:0043226organelle158129.657.7e-04
GO:0043229intracellular organelle158129.657.7e-04
GO:0005829cytosol 12 4.098.9e-04
GO:0031969chloroplast membrane 5 0.779.8e-04
GO:0043231intracellular membrane-bound organelle152124.811.1e-03
GO:0043227membrane-bound organelle152124.841.2e-03
GO:0042170plastid membrane 5 0.851.6e-03
GO:0042651thylakoid membrane 11 4.062.7e-03
GO:0019866organelle inner membrane 8 2.392.8e-03
GO:0044425membrane part 26 15.165.4e-03
GO:0005783endoplasmic reticulum 6 1.727.6e-03
GO:0009535thylakoid membrane (sensu Viridiplantae) 10 4.047.7e-03
GO:0009941chloroplast envelope 5 1.258.4e-03
GO:0044436thylakoid part 11 4.799.1e-03

list of genes (text format)

Pattern contains 104 genes

Molecular Function
  terms counts expected.values pvals
GO:0015036disulfide oxidoreductase activity40.60.0031

Biological Pathway
  terms counts expected.values pvals
GO:0019748secondary metabolism61.450.0033
GO:0046483heterocycle metabolism40.720.0059

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid4017.15.0e-08
GO:0009507chloroplast3916.89.5e-08
GO:0044444cytoplasmic part5633.53.2e-06
GO:0005737cytoplasm5634.91.3e-05
GO:0043231intracellular membrane-bound organelle5939.14.8e-05
GO:0043227membrane-bound organelle5939.24.8e-05
GO:0044424intracellular part6343.25.4e-05
GO:0005622intracellular6444.46.5e-05
GO:0043226organelle5940.71.7e-04
GO:0043229intracellular organelle5940.71.7e-04
GO:0044464cell part8267.06.8e-04
GO:0005623cell8267.06.8e-04
GO:0044435plastid part 8 2.32.1e-03
GO:0044434chloroplast part 7 2.04.4e-03

list of genes (text format)

Pattern contains 270 genes

Molecular Function
  terms counts expected.values pvals
GO:0003735structural constituent of ribosome53 3.919.5e-45
GO:0005198structural molecule activity54 5.255.0e-39
GO:0030554adenyl nucleotide binding3315.915.6e-05
GO:0051082unfolded protein binding 7 0.985.7e-05
GO:0000166nucleotide binding3920.769.6e-05
GO:0017076purine nucleotide binding3518.301.6e-04
GO:0016538cyclin-dependent protein kinase regulator activity 4 0.291.8e-04
GO:0005524ATP binding3115.561.9e-04
GO:0019887protein kinase regulator activity 4 0.459.9e-04
GO:0019207kinase regulator activity 4 0.461.1e-03
GO:0008168methyltransferase activity 7 1.651.4e-03
GO:0016741transferase activity, transferring one-carbon groups 7 1.681.5e-03
GO:0016836hydro-lyase activity 5 0.881.9e-03
GO:0016874ligase activity11 3.932.1e-03
GO:0008565protein transporter activity 6 1.443.3e-03
GO:0003899DNA-directed RNA polymerase activity 4 0.643.9e-03
GO:0003777microtubule motor activity 4 0.841.0e-02

Biological Pathway
  terms counts expected.values pvals
GO:0044249cellular biosynthesis 83 22.808.2e-27
GO:0009058biosynthesis 85 25.052.1e-25
GO:0006412protein biosynthesis 58 11.412.2e-25
GO:0006996organelle organization and biogenesis 45 6.711.7e-24
GO:0009059macromolecule biosynthesis 62 14.171.1e-23
GO:0042254ribosome biogenesis and assembly 23 1.741.7e-19
GO:0007028cytoplasm organization and biogenesis 23 1.741.7e-19
GO:0043170macromolecule metabolism110 50.626.8e-18
GO:0019538protein metabolism 90 36.067.9e-18
GO:0016043cell organization and biogenesis 52 13.968.8e-17
GO:0007046ribosome biogenesis 20 1.581.0e-16
GO:0050875cellular physiological process173114.701.8e-14
GO:0044267cellular protein metabolism 81 34.774.0e-14
GO:0044238primary metabolism137 80.636.3e-14
GO:0044260cellular macromolecule metabolism 82 35.907.7e-14
GO:0044237cellular metabolism145 88.469.7e-14
GO:0009987cellular process173118.708.1e-13
GO:0007582physiological process178127.341.5e-11
GO:0008152metabolism150100.106.3e-11
GO:0006323DNA packaging 12 1.544.7e-08
GO:0006325establishment and/or maintenance of chromatin architecture 12 1.544.7e-08
GO:0007001chromosome organization and biogenesis (sensu Eukaryota) 12 1.649.1e-08
GO:0006520amino acid metabolism 17 3.591.3e-07
GO:0009308amine metabolism 18 4.162.2e-07
GO:0051276chromosome organization and biogenesis 12 1.782.3e-07
GO:0006259DNA metabolism 17 4.108.5e-07
GO:0006333chromatin assembly or disassembly 9 1.081.3e-06
GO:0006807nitrogen compound metabolism 18 4.721.4e-06
GO:0019752carboxylic acid metabolism 22 6.821.5e-06
GO:0006082organic acid metabolism 22 6.851.6e-06
GO:0031497chromatin assembly 8 0.892.9e-06
GO:0006519amino acid and derivative metabolism 18 5.286.5e-06
GO:0006334nucleosome assembly 7 0.749.0e-06
GO:0006414translational elongation 5 0.321.4e-05
GO:0006461protein complex assembly 8 1.141.9e-05
GO:0043037translation 10 1.932.5e-05
GO:0009309amine biosynthesis 10 2.033.9e-05
GO:0044271nitrogen compound biosynthesis 10 2.217.8e-05
GO:0008652amino acid biosynthesis 9 1.829.2e-05
GO:0006457protein folding 10 2.512.3e-04
GO:0009067aspartate family amino acid biosynthesis 4 0.322.6e-04
GO:0009081branched chain family amino acid metabolism 4 0.322.6e-04
GO:0009066aspartate family amino acid metabolism 5 0.665.2e-04
GO:0006261DNA-dependent DNA replication 4 0.531.9e-03
GO:0016568chromatin modification 4 0.603.0e-03
GO:0006260DNA replication 5 1.084.5e-03
GO:0007049cell cycle 6 1.575.0e-03

Cellular Component
  terms counts expected.values pvals
GO:0043228non-membrane-bound organelle 75 8.256.6e-51
GO:0043232intracellular non-membrane-bound organelle 75 8.256.6e-51
GO:0030529ribonucleoprotein complex 58 4.593.1e-47
GO:0005840ribosome 53 3.931.4e-44
GO:0043234protein complex 78 15.625.1e-34
GO:0044424intracellular part178107.742.0e-19
GO:0005622intracellular178110.776.4e-18
GO:0005737cytoplasm153 87.131.5e-17
GO:0043226organelle167101.474.6e-17
GO:0043229intracellular organelle167101.474.6e-17
GO:0044444cytoplasmic part146 83.544.2e-16
GO:0044422organelle part 54 16.801.2e-14
GO:0044446intracellular organelle part 54 16.801.2e-14
GO:0044445cytosolic part 18 1.593.0e-14
GO:0005830cytosolic ribosome (sensu Eukaryota) 16 1.364.3e-13
GO:0005829cytosol 20 3.208.2e-11
GO:0015934large ribosomal subunit 9 0.765.9e-08
GO:0043233organelle lumen 16 3.322.5e-07
GO:0031974membrane-enclosed lumen 16 3.322.5e-07
GO:0000785chromatin 9 0.902.8e-07
GO:0044464cell part202167.097.4e-07
GO:0005623cell202167.097.4e-07
GO:0005730nucleolus 8 0.862.3e-06
GO:0044427chromosomal part 9 1.233.9e-06
GO:0000786nucleosome 7 0.684.9e-06
GO:0044452nucleolar part 5 0.341.9e-05
GO:0005732small nucleolar ribonucleoprotein complex 5 0.341.9e-05
GO:0031980mitochondrial lumen 5 0.383.4e-05
GO:0005759mitochondrial matrix 5 0.383.4e-05
GO:0005694chromosome 9 1.664.5e-05
GO:0016282eukaryotic 43S preinitiation complex 6 0.749.7e-05
GO:0031981nuclear lumen 9 1.861.1e-04
GO:0043231intracellular membrane-bound organelle125 97.682.8e-04
GO:0043227membrane-bound organelle125 97.702.8e-04
GO:0005843cytosolic small ribosomal subunit (sensu Eukaryota) 5 0.634.0e-04
GO:0016283eukaryotic 48S initiation complex 5 0.634.0e-04
GO:0015935small ribosomal subunit 6 0.974.1e-04
GO:0044429mitochondrial part 9 2.264.6e-04
GO:0015630microtubule cytoskeleton 7 1.415.4e-04
GO:0044430cytoskeletal part 7 1.701.6e-03
GO:0044428nuclear part 9 2.761.9e-03
GO:0005856cytoskeleton 7 1.923.2e-03
GO:0009536plastid 59 42.664.9e-03
GO:0005875microtubule associated complex 4 0.808.3e-03

list of genes (text format)

Pattern contains 362 genes

Molecular Function
  terms counts expected.values pvals
GO:0003735structural constituent of ribosome 23 5.11.8e-09
GO:0005198structural molecule activity 26 6.86.0e-09
GO:0003824catalytic activity131110.69.8e-03

Biological Pathway
  terms counts expected.values pvals
GO:0009058biosynthesis 77 33.027.8e-13
GO:0044249cellular biosynthesis 70 30.061.2e-11
GO:0006260DNA replication 11 1.421.6e-07
GO:0009059macromolecule biosynthesis 42 18.687.3e-07
GO:0044237cellular metabolism158116.611.2e-06
GO:0050875cellular physiological process193151.191.4e-06
GO:0009987cellular process197156.472.8e-06
GO:0007582physiological process208167.863.0e-06
GO:0008152metabolism171131.955.8e-06
GO:0046483heterocycle metabolism 12 2.581.1e-05
GO:0006412protein biosynthesis 33 15.042.0e-05
GO:0046148pigment biosynthesis 7 0.964.7e-05
GO:0006779porphyrin biosynthesis 6 0.727.4e-05
GO:0006259DNA metabolism 16 5.401.1e-04
GO:0042440pigment metabolism 7 1.121.3e-04
GO:0051188cofactor biosynthesis 9 1.981.7e-04
GO:0006778porphyrin metabolism 6 0.882.3e-04
GO:0043170macromolecule metabolism 93 66.732.8e-04
GO:0015995chlorophyll biosynthesis 4 0.395.3e-04
GO:0006996organelle organization and biogenesis 20 8.856.3e-04
GO:0015980energy derivation by oxidation of organic compounds 11 3.457.4e-04
GO:0019748secondary metabolism 14 5.197.7e-04
GO:0044238primary metabolism133106.299.9e-04
GO:0006091generation of precursor metabolites and energy 25 12.921.3e-03
GO:0009117nucleotide metabolism 8 2.121.3e-03
GO:0015994chlorophyll metabolism 4 0.491.4e-03
GO:0006730one-carbon compound metabolism 4 0.511.6e-03
GO:0019752carboxylic acid metabolism 19 8.991.9e-03
GO:0006082organic acid metabolism 19 9.031.9e-03
GO:0006334nucleosome assembly 5 0.982.9e-03
GO:0006066alcohol metabolism 10 3.543.1e-03
GO:0006461protein complex assembly 6 1.514.0e-03
GO:0051186cofactor metabolism 10 3.704.2e-03
GO:0007046ribosome biogenesis 7 2.095.0e-03
GO:0044262cellular carbohydrate metabolism 15 7.055.1e-03
GO:0006261DNA-dependent DNA replication 4 0.705.2e-03
GO:0009408response to heat 5 1.166.0e-03
GO:0031497chromatin assembly 5 1.176.4e-03
GO:0015979photosynthesis 6 1.707.2e-03
GO:0046165alcohol biosynthesis 4 0.777.2e-03
GO:0006092main pathways of carbohydrate metabolism 7 2.247.4e-03
GO:0042254ribosome biogenesis and assembly 7 2.308.4e-03
GO:0007028cytoplasm organization and biogenesis 7 2.308.4e-03
GO:0044271nitrogen compound biosynthesis 8 2.919.1e-03
GO:0006790sulfur metabolism 5 1.309.6e-03
GO:0006096glycolysis 4 0.849.8e-03

Cellular Component
  terms counts expected.values pvals
GO:0005737cytoplasm182119.633.2e-12
GO:0044444cytoplasmic part176114.705.2e-12
GO:0044445cytosolic part 17 2.196.5e-11
GO:0005829cytosol 22 4.406.4e-10
GO:0044422organelle part 55 23.071.5e-09
GO:0044446intracellular organelle part 55 23.071.5e-09
GO:0005830cytosolic ribosome (sensu Eukaryota) 14 1.875.1e-09
GO:0005840ribosome 23 5.406.0e-09
GO:0044424intracellular part200147.939.7e-09
GO:0043226organelle191139.321.1e-08
GO:0043229intracellular organelle191139.321.1e-08
GO:0043228non-membrane-bound organelle 34 11.321.2e-08
GO:0043232intracellular non-membrane-bound organelle 34 11.321.2e-08
GO:0044464cell part276229.421.8e-08
GO:0005623cell276229.421.8e-08
GO:0005622intracellular203152.092.1e-08
GO:0030529ribonucleoprotein complex 23 6.301.0e-07
GO:0044434chloroplast part 24 7.001.7e-07
GO:0009507chloroplast 95 57.432.1e-07
GO:0009536plastid 95 58.585.2e-07
GO:0043234protein complex 46 21.448.2e-07
GO:0009534thylakoid (sensu Viridiplantae) 19 5.131.1e-06
GO:0031976plastid thylakoid 19 5.131.1e-06
GO:0044436thylakoid part 19 5.151.2e-06
GO:0031984organelle subcompartment 19 5.151.2e-06
GO:0044435plastid part 24 7.821.3e-06
GO:0009535thylakoid membrane (sensu Viridiplantae) 17 4.341.9e-06
GO:0042651thylakoid membrane 17 4.362.0e-06
GO:0009579thylakoid 19 5.352.0e-06
GO:0043231intracellular membrane-bound organelle171134.113.1e-05
GO:0043227membrane-bound organelle171134.153.1e-05
GO:0031090organelle membrane 24 9.967.1e-05
GO:0005843cytosolic small ribosomal subunit (sensu Eukaryota) 6 0.862.1e-04
GO:0016283eukaryotic 48S initiation complex 6 0.862.1e-04
GO:0015935small ribosomal subunit 7 1.333.6e-04
GO:0016282eukaryotic 43S preinitiation complex 6 1.025.4e-04
GO:0015934large ribosomal subunit 6 1.045.9e-04

list of genes (text format)

Pattern contains 60 genes

Molecular Function
  terms counts expected.values pvals
GO:0005198structural molecule activity81.081.1e-05
GO:0003735structural constituent of ribosome70.801.4e-05
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor40.251.1e-04
GO:0016614oxidoreductase activity, acting on CH-OH group of donors40.302.2e-04

Biological Pathway
  terms counts expected.values pvals
GO:0006412protein biosynthesis 92.360.00048
GO:0044249cellular biosynthesis124.710.00193
GO:0009059macromolecule biosynthesis 92.930.00223
GO:0019752carboxylic acid metabolism 61.410.00270
GO:0006082organic acid metabolism 61.410.00276
GO:0009058biosynthesis125.180.00422
GO:0006520amino acid metabolism 40.740.00639

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid29 9.86.9e-09
GO:0009507chloroplast28 9.62.1e-08
GO:0005737cytoplasm3920.13.9e-07
GO:0044444cytoplasmic part3819.24.5e-07
GO:0043226organelle4023.49.0e-06
GO:0043229intracellular organelle4023.49.0e-06
GO:0044424intracellular part4124.81.5e-05
GO:0005840ribosome 7 0.93.2e-05
GO:0043231intracellular membrane-bound organelle3822.53.3e-05
GO:0043227membrane-bound organelle3822.53.3e-05
GO:0005622intracellular4125.53.4e-05
GO:0030529ribonucleoprotein complex 7 1.18.4e-05
GO:0043228non-membrane-bound organelle 8 1.95.7e-04
GO:0043232intracellular non-membrane-bound organelle 8 1.95.7e-04
GO:0044435plastid part 5 1.39.9e-03

list of genes (text format)

Pattern contains 46 genes

Molecular Function
  terms counts expected.values pvals
GO:0003735structural constituent of ribosome50.660.00049
GO:0005198structural molecule activity50.890.00182

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0005737cytoplasm2614.520.00027
GO:0044444cytoplasmic part2513.920.00040
GO:0005840ribosome 5 0.660.00047
GO:0030529ribonucleoprotein complex 5 0.760.00095
GO:0044424intracellular part2817.960.00150
GO:0005622intracellular2818.460.00249
GO:0009536plastid15 7.110.00262
GO:0043226organelle2616.910.00373
GO:0043229intracellular organelle2616.910.00373
GO:0043234protein complex 8 2.600.00379

list of genes (text format)

Pattern contains 87 genes

Molecular Function
  terms counts expected.values pvals
GO:0003824catalytic activity4428.10.00023
GO:0003723RNA binding 6 1.70.00695
GO:0016874ligase activity 5 1.30.00958

Biological Pathway
  terms counts expected.values pvals
GO:0006399tRNA metabolism 5 0.321.8e-05
GO:0006418tRNA aminoacylation for protein translation 4 0.204.4e-05
GO:0043038amino acid activation 4 0.204.4e-05
GO:0043039tRNA aminoacylation 4 0.204.4e-05
GO:0006520amino acid metabolism 7 1.081.0e-04
GO:0016070RNA metabolism 7 1.151.5e-04
GO:0006519amino acid and derivative metabolism 8 1.591.9e-04
GO:0019752carboxylic acid metabolism 9 2.062.0e-04
GO:0006082organic acid metabolism 9 2.072.1e-04
GO:0009308amine metabolism 7 1.262.6e-04
GO:0043037translation 5 0.582.9e-04
GO:0006807nitrogen compound metabolism 7 1.425.5e-04
GO:0009793embryonic development (sensu Magnoliophyta) 5 0.942.5e-03
GO:0009790embryonic development 5 1.003.3e-03
GO:0048316seed development 5 1.013.4e-03
GO:0048608reproductive structure development 5 1.023.6e-03
GO:0008152metabolism4230.193.8e-03

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid4914.16.0e-18
GO:0009507chloroplast4713.81.3e-16
GO:0005737cytoplasm6328.71.5e-14
GO:0044444cytoplasmic part6127.55.9e-14
GO:0043231intracellular membrane-bound organelle6132.21.3e-10
GO:0043227membrane-bound organelle6132.21.3e-10
GO:0044424intracellular part6335.57.9e-10
GO:0043226organelle6133.47.9e-10
GO:0043229intracellular organelle6133.47.9e-10
GO:0005622intracellular6336.53.0e-09
GO:0044464cell part7655.06.4e-08
GO:0005623cell7655.06.4e-08
GO:0044434chloroplast part10 1.76.7e-06
GO:0044435plastid part10 1.91.8e-05
GO:0009535thylakoid membrane (sensu Viridiplantae) 6 1.06.2e-04
GO:0031090organelle membrane 9 2.46.3e-04
GO:0042651thylakoid membrane 6 1.06.3e-04
GO:0009534thylakoid (sensu Viridiplantae) 6 1.21.5e-03
GO:0031976plastid thylakoid 6 1.21.5e-03
GO:0044436thylakoid part 6 1.21.5e-03
GO:0031984organelle subcompartment 6 1.21.5e-03
GO:0009579thylakoid 6 1.31.8e-03

list of genes (text format)

Pattern contains 67 genes

Molecular Function
  terms counts expected.values pvals
GO:0003735structural constituent of ribosome90.912.8e-07
GO:0005198structural molecule activity91.223.2e-06

Biological Pathway
  terms counts expected.values pvals
GO:0044249cellular biosynthesis165.567.8e-05
GO:0009058biosynthesis166.112.4e-04
GO:0051188cofactor biosynthesis 40.374.9e-04
GO:0042254ribosome biogenesis and assembly 40.428.6e-04
GO:0007028cytoplasm organization and biogenesis 40.428.6e-04
GO:0006412protein biosynthesis 92.781.7e-03
GO:0019748secondary metabolism 50.962.7e-03
GO:0051186cofactor metabolism 40.684.9e-03
GO:0006807nitrogen compound metabolism 51.155.8e-03
GO:0009059macromolecule biosynthesis 93.467.0e-03

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid4311.001.3e-18
GO:0009507chloroplast3910.793.4e-15
GO:0005737cytoplasm5222.477.1e-14
GO:0044444cytoplasmic part5021.555.6e-13
GO:0044424intracellular part5227.798.6e-10
GO:0043226organelle5026.171.9e-09
GO:0043229intracellular organelle5026.171.9e-09
GO:0005622intracellular5228.572.8e-09
GO:0044435plastid part12 1.472.1e-08
GO:0043231intracellular membrane-bound organelle4625.191.6e-07
GO:0043227membrane-bound organelle4625.201.7e-07
GO:0009534thylakoid (sensu Viridiplantae) 9 0.964.7e-07
GO:0031976plastid thylakoid 9 0.964.7e-07
GO:0031984organelle subcompartment 9 0.974.9e-07
GO:0009579thylakoid 9 1.006.7e-07
GO:0044434chloroplast part10 1.316.8e-07
GO:0005840ribosome 9 1.017.2e-07
GO:0030529ribonucleoprotein complex 9 1.182.6e-06
GO:0044422organelle part16 4.334.0e-06
GO:0044446intracellular organelle part16 4.334.0e-06
GO:0044436thylakoid part 8 0.975.3e-06
GO:0009535thylakoid membrane (sensu Viridiplantae) 7 0.821.7e-05
GO:0042651thylakoid membrane 7 0.821.7e-05
GO:0044464cell part5843.101.9e-05
GO:0005623cell5843.101.9e-05
GO:0015934large ribosomal subunit 4 0.204.3e-05
GO:0031090organelle membrane 9 1.879.7e-05
GO:0043228non-membrane-bound organelle 9 2.132.5e-04
GO:0043232intracellular non-membrane-bound organelle 9 2.132.5e-04
GO:0009532plastid stroma 4 0.354.2e-04
GO:0043234protein complex10 4.036.4e-03

list of genes (text format)

Pattern contains 89 genes

Molecular Function
  terms counts expected.values pvals
GO:0016853isomerase activity50.730.00083
GO:0009055electron carrier activity50.970.00288

Biological Pathway
  terms counts expected.values pvals
GO:0044249cellular biosynthesis22 7.161.2e-06
GO:0009058biosynthesis22 7.875.5e-06
GO:0009059macromolecule biosynthesis14 4.451.2e-04
GO:0019752carboxylic acid metabolism 9 2.142.8e-04
GO:0006082organic acid metabolism 9 2.152.9e-04
GO:0043037translation 5 0.613.5e-04
GO:0006399tRNA metabolism 4 0.343.7e-04
GO:0044237cellular metabolism4227.786.7e-04
GO:0006520amino acid metabolism 6 1.139.2e-04
GO:0009308amine metabolism 6 1.312.0e-03
GO:0043170macromolecule metabolism2715.902.3e-03
GO:0008152metabolism4431.442.6e-03
GO:0006412protein biosynthesis10 3.582.9e-03
GO:0006807nitrogen compound metabolism 6 1.483.7e-03
GO:0006519amino acid and derivative metabolism 6 1.666.3e-03
GO:0044260cellular macromolecule metabolism2011.276.4e-03
GO:0016070RNA metabolism 5 1.196.9e-03

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid5114.569.6e-19
GO:0009507chloroplast4814.271.3e-16
GO:0044444cytoplasmic part6428.515.1e-15
GO:0005737cytoplasm6529.748.5e-15
GO:0043231intracellular membrane-bound organelle6533.333.8e-12
GO:0043227membrane-bound organelle6533.343.9e-12
GO:0043226organelle6634.635.8e-12
GO:0043229intracellular organelle6634.635.8e-12
GO:0044424intracellular part6736.772.9e-11
GO:0005622intracellular6737.801.3e-10
GO:0044464cell part7657.022.3e-06
GO:0005623cell7657.022.3e-06
GO:0009532plastid stroma 5 0.461.0e-04
GO:0044435plastid part 7 1.943.3e-03

list of genes (text format)

Pattern contains 64 genes

Molecular Function
  terms counts expected.values pvals
GO:0008509anion transporter activity 40.270.00015
GO:0003700transcription factor activity114.380.00375
GO:0005215transporter activity 93.400.00629
GO:0015075ion transporter activity 51.230.00760
GO:0030528transcription regulator activity114.830.00780

Biological Pathway
  terms counts expected.values pvals
GO:0009628response to abiotic stimulus133.705.1e-05
GO:0010035response to inorganic substance 40.226.4e-05
GO:0050896response to stimulus155.441.9e-04
GO:0009651response to salt stress 40.449.9e-04
GO:0006970response to osmotic stress 40.491.5e-03
GO:0009416response to light stimulus 40.684.7e-03
GO:0009314response to radiation 40.694.9e-03

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 104 genes

Molecular Function
  terms counts expected.values pvals
GO:0003700transcription factor activity24 7.231.3e-07
GO:0030528transcription regulator activity24 7.987.7e-07
GO:0003677DNA binding24 9.451.5e-05
GO:0003676nucleic acid binding2713.201.7e-04
GO:0016563transcriptional activator activity 4 0.428.5e-04
GO:0008270zinc ion binding12 4.281.2e-03
GO:0005488binding4632.563.3e-03
GO:0046914transition metal ion binding14 6.193.4e-03
GO:0015036disulfide oxidoreductase activity 4 0.664.4e-03

Biological Pathway
  terms counts expected.values pvals
GO:0050789regulation of biological process21 7.802.0e-05
GO:0050791regulation of physiological process20 7.282.5e-05
GO:0009072aromatic amino acid family metabolism 4 0.215.2e-05
GO:0044237cellular metabolism4931.075.9e-05
GO:0042221response to chemical stimulus14 4.186.4e-05
GO:0019222regulation of metabolism18 6.546.7e-05
GO:0009628response to abiotic stimulus17 6.161.1e-04
GO:0045449regulation of transcription17 6.251.3e-04
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism17 6.301.4e-04
GO:0050896response to stimulus21 9.071.8e-04
GO:0051244regulation of cellular physiological process18 7.101.9e-04
GO:0050875cellular physiological process5740.291.9e-04
GO:0031323regulation of cellular metabolism17 6.482.0e-04
GO:0050794regulation of cellular process18 7.142.1e-04
GO:0009814defense response to pathogen, incompatible interaction 6 0.852.2e-04
GO:0006350transcription17 6.572.3e-04
GO:0007582physiological process6144.732.4e-04
GO:0009987cellular process5841.692.6e-04
GO:0009719response to endogenous stimulus11 3.263.9e-04
GO:0008152metabolism5135.164.0e-04
GO:0006950response to stress14 5.034.4e-04
GO:0048518positive regulation of biological process 4 0.375.3e-04
GO:0009309amine biosynthesis 5 0.717.5e-04
GO:0042829defense response to pathogen 7 1.548.7e-04
GO:0044271nitrogen compound biosynthesis 5 0.781.1e-03
GO:0009611response to wounding 5 0.781.1e-03
GO:0009753response to jasmonic acid stimulus 4 0.501.6e-03
GO:0051707response to other organism 8 2.312.2e-03
GO:0009861jasmonic acid and ethylene-dependent systemic resistance 4 0.562.4e-03
GO:0042828response to pathogen 7 1.852.5e-03
GO:0006355regulation of transcription, DNA-dependent10 3.643.4e-03
GO:0009308amine metabolism 6 1.463.5e-03
GO:0008652amino acid biosynthesis 4 0.643.9e-03
GO:0009613response to pest, pathogen or parasite 7 2.014.0e-03
GO:0006351transcription, DNA-dependent10 3.764.2e-03
GO:0009605response to external stimulus 5 1.135.5e-03
GO:0009416response to light stimulus 5 1.135.6e-03
GO:0044238primary metabolism4028.325.8e-03
GO:0006725aromatic compound metabolism 5 1.155.9e-03
GO:0009314response to radiation 5 1.155.9e-03
GO:0006807nitrogen compound metabolism 6 1.666.3e-03
GO:0009651response to salt stress 4 0.746.4e-03
GO:0006952defense response 7 2.308.1e-03
GO:0009607response to biotic stimulus 8 2.908.4e-03
GO:0006520amino acid metabolism 5 1.268.7e-03
GO:0006970response to osmotic stress 4 0.829.3e-03
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolism1810.089.9e-03

Cellular Component
  terms counts expected.values pvals
GO:0005622intracellular5439.60.0016
GO:0043231intracellular membrane-bound organelle4834.90.0035
GO:0043227membrane-bound organelle4834.90.0035
GO:0005634nucleus16 7.90.0049
GO:0009507chloroplast2514.90.0052
GO:0009536plastid2515.20.0067
GO:0043226organelle4836.20.0081
GO:0043229intracellular organelle4836.20.0081

list of genes (text format)

Pattern contains 9 genes

Molecular Function
  terms counts expected.values pvals
GO:0016740transferase activity40.710.0025

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 19 genes

Molecular Function - no significant GO terms found

Biological Pathway
  terms counts expected.values pvals
GO:0044262cellular carbohydrate metabolism 40.380.00044
GO:0009987cellular process158.340.00091
GO:0007582physiological process158.950.00229
GO:0005975carbohydrate metabolism 40.620.00286
GO:0050875cellular physiological process148.060.00342
GO:0009058biosynthesis 61.760.00552

Cellular Component
  terms counts expected.values pvals
GO:0044464cell part17120.0062
GO:0005623cell17120.0062

list of genes (text format)

Pattern contains 12 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 14 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 94 genes

Molecular Function
  terms counts expected.values pvals
GO:0003824catalytic activity47300.00024

Biological Pathway
  terms counts expected.values pvals
GO:0006629lipid metabolism10 2.175.9e-05
GO:0006790sulfur metabolism 4 0.333.3e-04
GO:0019752carboxylic acid metabolism 8 2.282.0e-03
GO:0006082organic acid metabolism 8 2.292.0e-03
GO:0008152metabolism4533.506.8e-03
GO:0006519amino acid and derivative metabolism 6 1.778.5e-03

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid2815.20.00066
GO:0009507chloroplast2714.90.00112
GO:0005737cytoplasm4531.10.00181
GO:0044444cytoplasmic part4329.80.00274
GO:0044435plastid part 7 2.00.00429
GO:0044464cell part7159.70.00626
GO:0005623cell7159.70.00626
GO:0044434chloroplast part 6 1.80.00986

list of genes (text format)

Pattern contains 71 genes

Molecular Function
  terms counts expected.values pvals
GO:0003824catalytic activity34220.0014
GO:0016491oxidoreductase activity10 40.0058

Biological Pathway
  terms counts expected.values pvals
GO:0019752carboxylic acid metabolism 9 1.869.3e-05
GO:0006082organic acid metabolism 9 1.879.6e-05
GO:0006092main pathways of carbohydrate metabolism 4 0.461.2e-03
GO:0008152metabolism4027.301.2e-03
GO:0009793embryonic development (sensu Magnoliophyta) 5 0.851.6e-03
GO:0009790embryonic development 5 0.912.1e-03
GO:0044237cellular metabolism3624.132.1e-03
GO:0048316seed development 5 0.912.2e-03
GO:0006979response to oxidative stress 4 0.552.3e-03
GO:0048608reproductive structure development 5 0.922.3e-03
GO:0006520amino acid metabolism 5 0.983.0e-03
GO:0006800oxygen and reactive oxygen species metabolism 4 0.603.1e-03
GO:0044262cellular carbohydrate metabolism 6 1.463.3e-03
GO:0007582physiological process4634.733.5e-03
GO:0006457protein folding 4 0.694.9e-03
GO:0009308amine metabolism 5 1.145.5e-03
GO:0015980energy derivation by oxidation of organic compounds 4 0.715.7e-03
GO:0050875cellular physiological process4231.285.7e-03
GO:0000003reproduction 5 1.207.0e-03
GO:0006807nitrogen compound metabolism 5 1.299.3e-03

Cellular Component
  terms counts expected.values pvals
GO:0005622intracellular4927.251.7e-08
GO:0044424intracellular part4826.512.7e-08
GO:0043231intracellular membrane-bound organelle4524.036.6e-08
GO:0043227membrane-bound organelle4524.046.6e-08
GO:0044444cytoplasmic part4120.551.1e-07
GO:0043226organelle4524.962.4e-07
GO:0043229intracellular organelle4524.962.4e-07
GO:0005737cytoplasm4121.443.9e-07
GO:0009507chloroplast2410.292.6e-05
GO:0009536plastid2410.503.6e-05
GO:0044464cell part5341.115.6e-04
GO:0005623cell5341.115.6e-04
GO:0031090organelle membrane 7 1.782.0e-03
GO:0005739mitochondrion17 8.192.2e-03
GO:0044422organelle part10 4.137.5e-03
GO:0044446intracellular organelle part10 4.137.5e-03
GO:0044434chloroplast part 5 1.258.3e-03
GO:0031967organelle envelope 4 0.839.5e-03
GO:0031975envelope 4 0.839.5e-03

list of genes (text format)

Pattern contains 21 genes

Molecular Function
  terms counts expected.values pvals
GO:0003824catalytic activity125.50.0010
GO:0016740transferase activity 61.90.0078

Biological Pathway
  terms counts expected.values pvals
GO:0005975carbohydrate metabolism 50.580.00020
GO:0044262cellular carbohydrate metabolism 40.350.00035
GO:0043170macromolecule metabolism103.350.00036
GO:0007582physiological process158.420.00053
GO:0008152metabolism136.620.00136
GO:0044238primary metabolism115.330.00401
GO:0050875cellular physiological process137.580.00603
GO:0009987cellular process137.850.00867
GO:0044237cellular metabolism115.850.00898

Cellular Component
  terms counts expected.values pvals
GO:0005737cytoplasm12 5.90.0027
GO:0044444cytoplasmic part11 5.60.0076
GO:0044464cell part1611.30.0089
GO:0005623cell1611.30.0089

list of genes (text format)

Pattern contains 22 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 7 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 138 genes

Molecular Function
  terms counts expected.values pvals
GO:0003824catalytic activity6744.22.5e-05
GO:0016491oxidoreductase activity17 8.02.6e-03
GO:0020037heme binding 5 1.38.7e-03

Biological Pathway
  terms counts expected.values pvals
GO:0006790sulfur metabolism 4 0.490.0015
GO:0006807nitrogen compound metabolism 8 2.360.0026
GO:0006091generation of precursor metabolites and energy12 4.900.0037
GO:0006519amino acid and derivative metabolism 8 2.640.0051
GO:0008152metabolism6450.050.0067
GO:0019752carboxylic acid metabolism 9 3.410.0073
GO:0006082organic acid metabolism 9 3.420.0075

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid3621.00.00055
GO:0009507chloroplast3420.60.00160
GO:0044444cytoplasmic part5741.10.00197
GO:0005737cytoplasm5842.90.00325
GO:0005829cytosol 6 1.60.00508

list of genes (text format)

Pattern contains 86 genes

Molecular Function
  terms counts expected.values pvals
GO:0016758transferase activity, transferring hexosyl groups50.830.0014

Biological Pathway
  terms counts expected.values pvals
GO:0015980energy derivation by oxidation of organic compounds40.750.0067
GO:0006066alcohol metabolism40.770.0073

Cellular Component
  terms counts expected.values pvals
GO:0044434chloroplast part10 1.563.3e-06
GO:0044435plastid part10 1.748.9e-06
GO:0044425membrane part14 3.631.3e-05
GO:0009534thylakoid (sensu Viridiplantae) 8 1.141.8e-05
GO:0031976plastid thylakoid 8 1.141.8e-05
GO:0044436thylakoid part 8 1.151.9e-05
GO:0031984organelle subcompartment 8 1.151.9e-05
GO:0009579thylakoid 8 1.192.5e-05
GO:0009535thylakoid membrane (sensu Viridiplantae) 7 0.975.1e-05
GO:0042651thylakoid membrane 7 0.975.3e-05
GO:0031224intrinsic to membrane11 2.666.4e-05
GO:0016020membrane3620.761.5e-04
GO:0031225anchored to membrane 6 0.821.7e-04
GO:0031090organelle membrane 9 2.223.6e-04
GO:0044464cell part6351.061.9e-03
GO:0005623cell6351.061.9e-03

list of genes (text format)

Pattern contains 8 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0009507chloroplast61.20.00013
GO:0009536plastid61.20.00014
GO:0044444cytoplasmic part62.30.00664
GO:0005737cytoplasm62.40.00841

list of genes (text format)

Pattern contains 26 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 6 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0009507chloroplast41.00.0086
GO:0009536plastid41.00.0092

list of genes (text format)

Pattern contains 15 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0044444cytoplasmic part94.30.0085

list of genes (text format)

Pattern contains 15 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0009535thylakoid membrane (sensu Viridiplantae) 50.163.5e-07
GO:0042651thylakoid membrane 50.163.6e-07
GO:0009534thylakoid (sensu Viridiplantae) 50.198.1e-07
GO:0031976plastid thylakoid 50.198.1e-07
GO:0044436thylakoid part 50.198.2e-07
GO:0031984organelle subcompartment 50.198.2e-07
GO:0009579thylakoid 50.209.9e-07
GO:0009507chloroplast102.162.8e-06
GO:0009536plastid102.203.3e-06
GO:0044434chloroplast part 50.263.7e-06
GO:0044435plastid part 50.296.4e-06
GO:0031090organelle membrane 50.372.1e-05
GO:0044444cytoplasmic part114.312.0e-04
GO:0005737cytoplasm114.493.1e-04
GO:0043231intracellular membrane-bound organelle115.049.6e-04
GO:0043227membrane-bound organelle115.049.6e-04
GO:0044422organelle part 50.871.1e-03
GO:0044446intracellular organelle part 50.871.1e-03
GO:0043226organelle115.231.4e-03
GO:0043229intracellular organelle115.231.4e-03
GO:0044424intracellular part115.562.5e-03
GO:0005622intracellular115.713.3e-03

list of genes (text format)

Pattern contains 90 genes

Molecular Function
  terms counts expected.values pvals
GO:0030508thiol-disulfide exchange intermediate activity 40.270.00015
GO:0015035protein disulfide oxidoreductase activity 40.310.00025
GO:0015036disulfide oxidoreductase activity 40.480.00139
GO:0009055electron carrier activity 50.860.00172
GO:0016491oxidoreductase activity114.470.00464

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0044464cell part7357.70.00019
GO:0005623cell7357.70.00019
GO:0016020membrane3823.50.00056
GO:0016021integral to membrane 7 2.10.00459
GO:0044434chloroplast part 6 1.80.00841
GO:0009534thylakoid (sensu Viridiplantae) 5 1.30.00953
GO:0031976plastid thylakoid 5 1.30.00953
GO:0031984organelle subcompartment 5 1.30.00966

list of genes (text format)

Pattern contains 16 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 308 genes

Molecular Function
  terms counts expected.values pvals
GO:0005527macrolide binding 5 0.321.4e-05
GO:0005528FK506 binding 5 0.321.4e-05
GO:0008168methyltransferase activity10 1.851.7e-05
GO:0016741transferase activity, transferring one-carbon groups10 1.881.9e-05
GO:0008144drug binding 5 0.352.2e-05
GO:0008170N-methyltransferase activity 4 0.261.2e-04
GO:0003735structural constituent of ribosome13 4.374.8e-04
GO:0003755peptidyl-prolyl cis-trans isomerase activity 5 0.769.7e-04
GO:0016859cis-trans isomerase activity 5 0.781.1e-03
GO:0015450protein translocase activity 4 0.603.0e-03
GO:0008565protein transporter activity 6 1.615.7e-03
GO:0005198structural molecule activity13 5.866.4e-03
GO:0005215transporter activity2615.738.4e-03

Biological Pathway
  terms counts expected.values pvals
GO:0006996organelle organization and biogenesis 26 7.332.5e-08
GO:0042254ribosome biogenesis and assembly 11 1.903.3e-06
GO:0007028cytoplasm organization and biogenesis 11 1.903.3e-06
GO:0016043cell organization and biogenesis 35 15.233.7e-06
GO:0007046ribosome biogenesis 10 1.739.2e-06
GO:0006334nucleosome assembly 7 0.811.6e-05
GO:0031497chromatin assembly 7 0.975.2e-05
GO:0051276chromosome organization and biogenesis 9 1.941.5e-04
GO:0009058biosynthesis 47 27.331.5e-04
GO:0006333chromatin assembly or disassembly 7 1.171.7e-04
GO:0009112nucleobase metabolism 4 0.302.1e-04
GO:0006461protein complex assembly 7 1.252.5e-04
GO:0006323DNA packaging 8 1.682.9e-04
GO:0006325establishment and/or maintenance of chromatin architecture 8 1.682.9e-04
GO:0009152purine ribonucleotide biosynthesis 5 0.644.2e-04
GO:0007001chromosome organization and biogenesis (sensu Eukaryota) 8 1.784.3e-04
GO:0009260ribonucleotide biosynthesis 5 0.654.7e-04
GO:0009150purine ribonucleotide metabolism 5 0.675.2e-04
GO:0009165nucleotide biosynthesis 6 1.025.3e-04
GO:0006259DNA metabolism 13 4.475.9e-04
GO:0006163purine nucleotide metabolism 5 0.717.0e-04
GO:0006164purine nucleotide biosynthesis 5 0.717.0e-04
GO:0044249cellular biosynthesis 41 24.889.8e-04
GO:0009259ribonucleotide metabolism 5 0.781.1e-03
GO:0006364rRNA processing 4 0.511.6e-03
GO:0016072rRNA metabolism 4 0.542.0e-03
GO:0042440pigment metabolism 5 0.932.3e-03
GO:0009987cellular process152129.493.1e-03
GO:0015031protein transport 11 4.163.3e-03
GO:0017038protein import 4 0.643.7e-03
GO:0045184establishment of protein localization 11 4.314.2e-03
GO:0008104protein localization 11 4.314.2e-03
GO:0009309amine biosynthesis 7 2.227.0e-03
GO:0050875cellular physiological process145125.128.1e-03
GO:0046148pigment biosynthesis 4 0.808.3e-03
GO:0009117nucleotide metabolism 6 1.768.4e-03
GO:0006605protein targeting 5 1.268.7e-03

Cellular Component
  terms counts expected.values pvals
GO:0044422organelle part 58 19.142.0e-14
GO:0044446intracellular organelle part 58 19.142.0e-14
GO:0044436thylakoid part 22 4.273.8e-10
GO:0009579thylakoid 22 4.437.8e-10
GO:0009534thylakoid (sensu Viridiplantae) 21 4.262.1e-09
GO:0031976plastid thylakoid 21 4.262.1e-09
GO:0031984organelle subcompartment 21 4.272.2e-09
GO:0044424intracellular part172122.702.8e-09
GO:0005622intracellular175126.154.0e-09
GO:0005737cytoplasm146 99.238.3e-09
GO:0031090organelle membrane 28 8.262.0e-08
GO:0044444cytoplasmic part138 95.149.3e-08
GO:0044434chloroplast part 22 5.801.0e-07
GO:0043226organelle157115.564.6e-07
GO:0043229intracellular organelle157115.564.6e-07
GO:0044435plastid part 22 6.496.9e-07
GO:0009535thylakoid membrane (sensu Viridiplantae) 16 3.607.5e-07
GO:0042651thylakoid membrane 16 3.627.9e-07
GO:0009507chloroplast 80 47.649.6e-07
GO:0043234protein complex 40 17.781.3e-06
GO:0043233organelle lumen 16 3.781.4e-06
GO:0031974membrane-enclosed lumen 16 3.781.4e-06
GO:0044429mitochondrial part 13 2.572.0e-06
GO:0009536plastid 80 48.592.1e-06
GO:0043228non-membrane-bound organelle 26 9.393.0e-06
GO:0043232intracellular non-membrane-bound organelle 26 9.393.0e-06
GO:0000786nucleosome 7 0.771.1e-05
GO:0043231intracellular membrane-bound organelle146111.241.8e-05
GO:0043227membrane-bound organelle146111.271.8e-05
GO:0000785chromatin 7 1.037.4e-05
GO:0044464cell part219190.301.3e-04
GO:0005623cell219190.301.3e-04
GO:0031967organelle envelope 13 3.841.4e-04
GO:0031975envelope 13 3.841.4e-04
GO:0005743mitochondrial inner membrane 8 1.672.7e-04
GO:0019866organelle inner membrane 9 2.133.0e-04
GO:0005740mitochondrial envelope 9 2.173.5e-04
GO:0044427chromosomal part 7 1.405.1e-04
GO:0009543thylakoid lumen (sensu Viridiplantae) 6 1.035.6e-04
GO:0031977thylakoid lumen 6 1.035.6e-04
GO:0031978plastid thylakoid lumen 6 1.035.6e-04
GO:0005840ribosome 13 4.486.1e-04
GO:0005694chromosome 8 1.896.3e-04
GO:0030529ribonucleoprotein complex 14 5.228.3e-04
GO:0031980mitochondrial lumen 4 0.438.5e-04
GO:0005759mitochondrial matrix 4 0.438.5e-04
GO:0031966mitochondrial membrane 8 2.041.0e-03
GO:0005829cytosol 10 3.653.8e-03
GO:0044428nuclear part 9 3.144.5e-03
GO:0005830cytosolic ribosome (sensu Eukaryota) 6 1.554.6e-03
GO:0005834heterotrimeric G-protein complex 4 0.797.9e-03
GO:0019897extrinsic to plasma membrane 4 0.808.5e-03
GO:0044425membrane part 23 13.519.3e-03
GO:0044445cytosolic part 6 1.829.9e-03

list of genes (text format)

Pattern contains 314 genes

Molecular Function
  terms counts expected.values pvals
GO:0009055electron carrier activity 13 3.44.6e-05
GO:0005525GTP binding 11 2.91.8e-04
GO:0019001guanyl nucleotide binding 11 3.02.1e-04
GO:0030234enzyme regulator activity 11 3.46.1e-04
GO:0003824catalytic activity12598.67.1e-04
GO:0015035protein disulfide oxidoreductase activity 6 1.21.5e-03
GO:0015036disulfide oxidoreductase activity 7 1.93.3e-03
GO:0005507copper ion binding 6 1.53.4e-03
GO:0030508thiol-disulfide exchange intermediate activity 5 1.14.5e-03
GO:0016830carbon-carbon lyase activity 5 1.27.0e-03
GO:0016491oxidoreductase activity 2917.97.1e-03
GO:0005351sugar porter activity 5 1.28.2e-03

Biological Pathway
  terms counts expected.values pvals
GO:0015979photosynthesis 11 1.462.2e-07
GO:0019684photosynthesis, light reaction 8 0.892.6e-06
GO:0000074regulation of progression through cell cycle 7 1.121.3e-04
GO:0051726regulation of cell cycle 7 1.121.3e-04
GO:0007049cell cycle 8 1.774.1e-04
GO:0007582physiological process171143.664.9e-04
GO:0006091generation of precursor metabolites and energy 22 11.051.8e-03
GO:0006519amino acid and derivative metabolism 14 5.962.8e-03
GO:0044271nitrogen compound biosynthesis 8 2.493.6e-03
GO:0006810transport 42 27.804.4e-03
GO:0051179localization 42 27.984.9e-03
GO:0051234establishment of localization 42 27.984.9e-03
GO:0044249cellular biosynthesis 39 25.735.7e-03
GO:0009058biosynthesis 42 28.265.8e-03
GO:0006807nitrogen compound metabolism 12 5.337.6e-03
GO:0006869lipid transport 5 1.268.6e-03
GO:0050875cellular physiological process149129.399.8e-03

Cellular Component
  terms counts expected.values pvals
GO:0044464cell part241191.624.3e-11
GO:0005623cell241191.624.3e-11
GO:0009579thylakoid 20 4.472.6e-08
GO:0009534thylakoid (sensu Viridiplantae) 19 4.297.0e-08
GO:0031976plastid thylakoid 19 4.297.0e-08
GO:0044436thylakoid part 19 4.307.4e-08
GO:0031984organelle subcompartment 19 4.307.4e-08
GO:0016020membrane119 77.939.8e-08
GO:0009535thylakoid membrane (sensu Viridiplantae) 17 3.631.6e-07
GO:0042651thylakoid membrane 17 3.641.7e-07
GO:0009507chloroplast 82 47.973.2e-07
GO:0044434chloroplast part 21 5.844.9e-07
GO:0009536plastid 82 48.937.3e-07
GO:0044435plastid part 21 6.532.9e-06
GO:0009543thylakoid lumen (sensu Viridiplantae) 8 1.038.7e-06
GO:0031977thylakoid lumen 8 1.038.7e-06
GO:0031978plastid thylakoid lumen 8 1.038.7e-06
GO:0009521photosystem 7 0.761.0e-05
GO:0043233organelle lumen 13 3.811.3e-04
GO:0031974membrane-enclosed lumen 13 3.811.3e-04
GO:0005737cytoplasm129 99.922.3e-04
GO:0031090organelle membrane 20 8.322.9e-04
GO:0044444cytoplasmic part124 95.803.1e-04
GO:0044422organelle part 34 19.279.2e-04
GO:0044446intracellular organelle part 34 19.279.2e-04
GO:0012505endomembrane system 71 50.021.0e-03
GO:0009523photosystem II 4 0.521.8e-03
GO:0031224intrinsic to membrane 20 9.972.6e-03
GO:0044425membrane part 25 13.612.6e-03
GO:0005730nucleolus 5 0.993.1e-03
GO:0031225anchored to membrane 9 3.073.9e-03
GO:0043231intracellular membrane-bound organelle133112.026.7e-03
GO:0043227membrane-bound organelle133112.056.8e-03
GO:0043226organelle137116.367.8e-03
GO:0043229intracellular organelle137116.367.8e-03

list of genes (text format)

Pattern contains 22 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0044444cytoplasmic part146.00.00013
GO:0009507chloroplast103.00.00019
GO:0009536plastid103.00.00022
GO:0005737cytoplasm146.20.00022
GO:0043231intracellular membrane-bound organelle147.00.00088
GO:0043227membrane-bound organelle147.00.00088
GO:0043226organelle147.20.00137
GO:0043229intracellular organelle147.20.00137
GO:0044424intracellular part147.70.00274
GO:0005622intracellular147.90.00376

list of genes (text format)

Pattern contains 42 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0009507chloroplast18 6.83.6e-05
GO:0009536plastid18 6.94.8e-05
GO:0043231intracellular membrane-bound organelle2515.93.2e-03
GO:0043227membrane-bound organelle2515.93.3e-03
GO:0043226organelle2516.55.9e-03
GO:0043229intracellular organelle2516.55.9e-03

list of genes (text format)

Pattern contains 7 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 11 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0009507chloroplast 81.85.9e-05
GO:0009536plastid 81.96.8e-05
GO:0043231intracellular membrane-bound organelle104.35.4e-04
GO:0043227membrane-bound organelle104.35.4e-04
GO:0043226organelle104.47.8e-04
GO:0043229intracellular organelle104.47.8e-04
GO:0044444cytoplasmic part 93.61.3e-03
GO:0044424intracellular part104.71.4e-03
GO:0005622intracellular104.81.8e-03
GO:0005737cytoplasm 93.81.8e-03

list of genes (text format)

Pattern contains 41 genes

Molecular Function
  terms counts expected.values pvals
GO:0015036disulfide oxidoreductase activity40.249.6e-05

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0009507chloroplast21 6.316.2e-08
GO:0009536plastid21 6.438.9e-08
GO:0005737cytoplasm2713.144.9e-06
GO:0009535thylakoid membrane (sensu Viridiplantae) 6 0.487.2e-06
GO:0042651thylakoid membrane 6 0.487.4e-06
GO:0044444cytoplasmic part2612.609.2e-06
GO:0043231intracellular membrane-bound organelle2814.731.3e-05
GO:0043227membrane-bound organelle2814.731.3e-05
GO:0009534thylakoid (sensu Viridiplantae) 6 0.561.9e-05
GO:0031976plastid thylakoid 6 0.561.9e-05
GO:0044436thylakoid part 6 0.571.9e-05
GO:0031984organelle subcompartment 6 0.571.9e-05
GO:0009579thylakoid 6 0.592.4e-05
GO:0044424intracellular part2916.252.7e-05
GO:0043226organelle2815.303.0e-05
GO:0043229intracellular organelle2815.303.0e-05
GO:0005622intracellular2916.705.0e-05
GO:0044434chloroplast part 6 0.771.1e-04
GO:0044435plastid part 6 0.861.9e-04
GO:0031090organelle membrane 6 1.097.0e-04

list of genes (text format)

Pattern contains 18 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 31 genes

Molecular Function - no significant GO terms found

Biological Pathway
  terms counts expected.values pvals
GO:0007154cell communication510.0026

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 37 genes

Molecular Function - no significant GO terms found

Biological Pathway
  terms counts expected.values pvals
GO:0009628response to abiotic stimulus82.40.0020
GO:0042221response to chemical stimulus61.60.0049

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 25 genes

Molecular Function
  terms counts expected.values pvals
GO:0005215transporter activity51.20.0055

Biological Pathway
  terms counts expected.values pvals
GO:0009605response to external stimulus40.310.00022

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 303 genes

Molecular Function
  terms counts expected.values pvals
GO:0030528transcription regulator activity 59224.0e-12
GO:0003700transcription factor activity 55208.6e-12
GO:0003677DNA binding 63275.4e-11
GO:0003676nucleic acid binding 69371.5e-07
GO:0005488binding121911.2e-04

Biological Pathway
  terms counts expected.values pvals
GO:0050791regulation of physiological process 56 21.592.2e-11
GO:0051244regulation of cellular physiological process 55 21.062.7e-11
GO:0050794regulation of cellular process 55 21.173.4e-11
GO:0019222regulation of metabolism 52 19.384.1e-11
GO:0031323regulation of cellular metabolism 51 19.209.4e-11
GO:0045449regulation of transcription 49 18.542.8e-10
GO:0050789regulation of biological process 56 23.143.2e-10
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism 49 18.693.7e-10
GO:0006350transcription 50 19.484.9e-10
GO:0009725response to hormone stimulus 24 6.819.9e-08
GO:0009719response to endogenous stimulus 27 9.661.5e-06
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolism 55 29.894.8e-06
GO:0009733response to auxin stimulus 13 2.815.3e-06
GO:0006351transcription, DNA-dependent 28 11.157.3e-06
GO:0006355regulation of transcription, DNA-dependent 27 10.791.2e-05
GO:0042221response to chemical stimulus 27 12.391.2e-04
GO:0009628response to abiotic stimulus 34 18.283.4e-04
GO:0009735response to cytokinin stimulus 5 0.727.5e-04
GO:0006944membrane fusion 4 0.449.5e-04
GO:0009723response to ethylene stimulus 7 1.611.2e-03
GO:0009755hormone-mediated signaling 8 2.131.4e-03
GO:0050896response to stimulus 41 26.884.0e-03
GO:0016044membrane organization and biogenesis 4 0.654.0e-03
GO:0044238primary metabolism104 83.964.8e-03
GO:0009651response to salt stress 7 2.196.5e-03
GO:0050875cellular physiological process139119.447.8e-03
GO:0044237cellular metabolism111 92.128.2e-03
GO:0009737response to abscisic acid stimulus 7 2.349.3e-03

Cellular Component
  terms counts expected.values pvals
GO:0005634nucleus52245.7e-08

list of genes (text format)

Pattern contains 51 genes

Molecular Function
  terms counts expected.values pvals
GO:0030528transcription regulator activity18 4.02.8e-08
GO:0003700transcription factor activity16 3.72.7e-07
GO:0003677DNA binding16 4.89.4e-06
GO:0003676nucleic acid binding16 6.75.3e-04
GO:0005488binding2516.48.9e-03

Biological Pathway
  terms counts expected.values pvals
GO:0045449regulation of transcription133.381.8e-05
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism133.412.0e-05
GO:0006355regulation of transcription, DNA-dependent101.972.0e-05
GO:0006351transcription, DNA-dependent102.032.6e-05
GO:0031323regulation of cellular metabolism133.512.6e-05
GO:0019222regulation of metabolism133.542.9e-05
GO:0006350transcription133.563.0e-05
GO:0051244regulation of cellular physiological process133.846.8e-05
GO:0050794regulation of cellular process133.867.2e-05
GO:0050791regulation of physiological process133.948.8e-05
GO:0050789regulation of biological process134.221.8e-04
GO:0009733response to auxin stimulus 40.511.7e-03
GO:0009719response to endogenous stimulus 71.761.7e-03
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolism135.462.1e-03
GO:0042221response to chemical stimulus 72.266.8e-03
GO:0009725response to hormone stimulus 51.247.8e-03

Cellular Component
  terms counts expected.values pvals
GO:0005634nucleus143.77.7e-06

list of genes (text format)

Pattern contains 187 genes

Molecular Function
  terms counts expected.values pvals
GO:0003824catalytic activity9157.175.7e-08
GO:0016903oxidoreductase activity, acting on the aldehyde or oxo group of donors 4 0.451.1e-03
GO:0016491oxidoreductase activity2110.371.6e-03
GO:0016787hydrolase activity3018.907.0e-03
GO:0016772transferase activity, transferring phosphorus-containing groups2111.847.4e-03

Biological Pathway
  terms counts expected.values pvals
GO:0009081branched chain family amino acid metabolism 4 0.215.7e-05
GO:0007582physiological process10885.772.7e-04
GO:0008152metabolism 8967.424.2e-04
GO:0009063amino acid catabolism 4 0.364.4e-04
GO:0009310amine catabolism 4 0.364.4e-04
GO:0044270nitrogen compound catabolism 4 0.396.4e-04
GO:0009605response to external stimulus 8 2.171.5e-03
GO:0042157lipoprotein metabolism 10 3.231.6e-03
GO:0042158lipoprotein biosynthesis 10 3.231.6e-03
GO:0006497protein amino acid lipidation 10 3.231.6e-03
GO:0009628response to abiotic stimulus 2311.821.6e-03
GO:0019752carboxylic acid metabolism 12 4.592.3e-03
GO:0006082organic acid metabolism 12 4.612.4e-03
GO:0006520amino acid metabolism 8 2.423.0e-03
GO:0006519amino acid and derivative metabolism 10 3.563.1e-03
GO:0006499N-terminal protein myristoylation 9 3.134.4e-03
GO:0018377protein myristoylation 9 3.134.4e-03
GO:0018319protein amino acid myristoylation 9 3.134.4e-03
GO:0043543protein amino acid acylation 9 3.144.4e-03
GO:0009987cellular process 9679.957.1e-03
GO:0009308amine metabolism 8 2.807.3e-03
GO:0044237cellular metabolism 7559.588.0e-03
GO:0050875cellular physiological process 9377.258.2e-03
GO:0043449alkene metabolism 4 0.829.4e-03
GO:0044238primary metabolism 6954.319.8e-03

Cellular Component
  terms counts expected.values pvals
GO:0005622intracellular89730.0075

list of genes (text format)

Pattern contains 356 genes

Molecular Function
  terms counts expected.values pvals
GO:0008639small protein conjugating enzyme activity60.716.8e-05
GO:0008017microtubule binding40.374.5e-04
GO:0015631tubulin binding40.448.8e-04
GO:0004702receptor signaling protein serine/threonine kinase activity40.643.7e-03
GO:0005057receptor signaling protein activity40.664.1e-03
GO:0004840ubiquitin conjugating enzyme activity40.664.1e-03

Biological Pathway
  terms counts expected.values pvals
GO:0006914autophagy 6 0.303.5e-07
GO:0043412biopolymer modification4327.922.9e-03
GO:0006464protein modification4227.283.3e-03
GO:0006499N-terminal protein myristoylation13 5.926.9e-03
GO:0018377protein myristoylation13 5.926.9e-03
GO:0018319protein amino acid myristoylation13 5.926.9e-03
GO:0009639response to red or far red light 5 1.207.0e-03
GO:0043543protein amino acid acylation13 5.947.1e-03
GO:0042157lipoprotein metabolism13 6.118.8e-03
GO:0042158lipoprotein biosynthesis13 6.118.8e-03
GO:0006497protein amino acid lipidation13 6.118.8e-03
GO:0043283biopolymer metabolism5338.429.1e-03

Cellular Component
  terms counts expected.values pvals
GO:0043231intracellular membrane-bound organelle148122.870.0023
GO:0043227membrane-bound organelle148122.900.0023
GO:0005773vacuole 5 0.950.0026
GO:0009507chloroplast 71 52.620.0042
GO:0009536plastid 71 53.670.0068
GO:0043226organelle149127.640.0083
GO:0043229intracellular organelle149127.640.0083

list of genes (text format)

Pattern contains 32 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 22 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 7 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 44 genes

Molecular Function - no significant GO terms found

Biological Pathway
  terms counts expected.values pvals
GO:0009719response to endogenous stimulus 81.509.6e-05
GO:0009628response to abiotic stimulus102.833.5e-04
GO:0042221response to chemical stimulus 81.925.2e-04
GO:0009725response to hormone stimulus 61.055.8e-04
GO:0009733response to auxin stimulus 40.439.1e-04
GO:0050896response to stimulus114.162.0e-03
GO:0006950response to stress 72.317.2e-03

Cellular Component
  terms counts expected.values pvals
GO:0009507chloroplast146.60.0037
GO:0009536plastid146.80.0044

list of genes (text format)

Pattern contains 29 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0031090organelle membrane40.80.008

list of genes (text format)

Pattern contains 42 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 44 genes

Molecular Function
  terms counts expected.values pvals
GO:0008270zinc ion binding61.70.007

Biological Pathway
  terms counts expected.values pvals
GO:0009725response to hormone stimulus50.920.0021
GO:0009719response to endogenous stimulus51.300.0090

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 10 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 23 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0009579thylakoid 40.310.00022
GO:0009507chloroplast103.320.00057
GO:0009536plastid103.390.00068
GO:0043231intracellular membrane-bound organelle157.750.00109
GO:0043227membrane-bound organelle157.750.00110
GO:0005622intracellular168.790.00112
GO:0043226organelle158.050.00174
GO:0043229intracellular organelle158.050.00174
GO:0031090organelle membrane 40.580.00228
GO:0044424intracellular part158.550.00354
GO:0044422organelle part 51.330.00873
GO:0044446intracellular organelle part 51.330.00873

list of genes (text format)

Pattern contains 7 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 12 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 51 genes

Molecular Function - no significant GO terms found

Biological Pathway
  terms counts expected.values pvals
GO:0009737response to abscisic acid stimulus 40.410.00073
GO:0009628response to abiotic stimulus103.190.00099
GO:0009719response to endogenous stimulus 71.690.00132
GO:0009653morphogenesis 40.680.00459
GO:0042221response to chemical stimulus 72.160.00530
GO:0050896response to stimulus114.690.00543
GO:0007275development 72.240.00636
GO:0009725response to hormone stimulus 51.190.00645
GO:0044265cellular macromolecule catabolism 40.820.00893

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 5 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 9 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 12 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 2 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 134 genes

Molecular Function
  terms counts expected.values pvals
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors 5 0.291.0e-05
GO:0003824catalytic activity6240.744.4e-05
GO:0043492ATPase activity, coupled to movement of substances 6 0.882.6e-04
GO:0042626ATPase activity, coupled to transmembrane movement of substances 6 0.882.6e-04
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 6 0.892.7e-04
GO:0008233peptidase activity10 2.845.6e-04
GO:0042623ATPase activity, coupled 7 1.477.1e-04
GO:0016491oxidoreductase activity17 7.391.1e-03
GO:0016887ATPase activity 8 2.111.3e-03
GO:0016787hydrolase activity2513.471.6e-03
GO:0017111nucleoside-triphosphatase activity 8 2.797.0e-03
GO:0016462pyrophosphatase activity 8 2.929.0e-03
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 8 2.929.2e-03
GO:0016817hydrolase activity, acting on acid anhydrides 8 2.939.3e-03

Biological Pathway
  terms counts expected.values pvals
GO:0051186cofactor metabolism10 1.3801.3e-06
GO:0009581detection of external stimulus 4 0.0982.2e-06
GO:0009737response to abscisic acid stimulus 8 1.1051.5e-05
GO:0006818hydrogen transport 5 0.3402.2e-05
GO:0015992proton transport 5 0.3402.2e-05
GO:0051606detection of stimulus 4 0.1903.6e-05
GO:0006732coenzyme metabolism 7 0.9484.7e-05
GO:0051188cofactor biosynthesis 6 0.7399.8e-05
GO:0009117nucleotide metabolism 6 0.7911.4e-04
GO:0050875cellular physiological process7656.4012.1e-04
GO:0006119oxidative phosphorylation 4 0.2942.1e-04
GO:0006752group transfer coenzyme metabolism 4 0.3273.2e-04
GO:0006091generation of precursor metabolites and energy14 4.8193.3e-04
GO:0009628response to abiotic stimulus20 8.6313.4e-04
GO:0009725response to hormone stimulus11 3.2173.8e-04
GO:0009987cellular process7758.3694.0e-04
GO:0007582physiological process8162.6194.3e-04
GO:0042221response to chemical stimulus15 5.8527.4e-04
GO:0006810transport2412.1168.2e-04
GO:0051179localization2412.1949.0e-04
GO:0051234establishment of localization2412.1949.0e-04
GO:0015672monovalent inorganic cation transport 5 0.7529.5e-04
GO:0006508proteolysis11 3.6351.1e-03
GO:0009108coenzyme biosynthesis 4 0.4511.1e-03
GO:0050896response to stimulus2412.6911.6e-03
GO:0019752carboxylic acid metabolism10 3.3542.0e-03
GO:0006082organic acid metabolism10 3.3672.0e-03
GO:0046483heterocycle metabolism 5 0.9612.8e-03
GO:0009755hormone-mediated signaling 5 1.0073.4e-03
GO:0008152metabolism6449.2224.1e-03
GO:0009605response to external stimulus 6 1.5825.2e-03
GO:0006811ion transport 7 2.1586.0e-03
GO:0009719response to endogenous stimulus11 4.5646.0e-03
GO:0044248cellular catabolism 9 3.3806.9e-03
GO:0044237cellular metabolism5743.5007.2e-03
GO:0044249cellular biosynthesis2011.2137.6e-03
GO:0009056catabolism 9 3.4928.4e-03
GO:0015980energy derivation by oxidation of organic compounds 5 1.2889.5e-03
GO:0006812cation transport 6 1.8119.8e-03
GO:0006092main pathways of carbohydrate metabolism 4 0.8371.0e-02

Cellular Component
  terms counts expected.values pvals
GO:0030135coated vesicle 4 0.250.00011
GO:0016023cytoplasmic membrane-bound vesicle 4 0.290.00020
GO:0031410cytoplasmic vesicle 4 0.290.00020
GO:0031982vesicle 4 0.300.00022
GO:0031988membrane-bound vesicle 4 0.300.00022
GO:0031090organelle membrane12 3.650.00031
GO:0016020membrane4934.240.00278
GO:0044434chloroplast part 8 2.570.00433
GO:0044422organelle part17 8.470.00459
GO:0044446intracellular organelle part17 8.470.00459
GO:0031967organelle envelope 6 1.700.00728
GO:0031975envelope 6 1.700.00728
GO:0044435plastid part 8 2.870.00829
GO:0044464cell part9784.210.00888
GO:0005623cell9784.210.00888

list of genes (text format)

Pattern contains 111 genes

Molecular Function
  terms counts expected.values pvals
GO:0005525GTP binding 6 1.00.00055
GO:0019001guanyl nucleotide binding 6 1.00.00060
GO:0003824catalytic activity4734.20.00548

Biological Pathway
  terms counts expected.values pvals
GO:0015031protein transport71.510.00081
GO:0005996monosaccharide metabolism50.730.00085
GO:0045184establishment of protein localization71.570.00099
GO:0008104protein localization71.570.00099
GO:0009309amine biosynthesis50.810.00130
GO:0044271nitrogen compound biosynthesis50.880.00186
GO:0019318hexose metabolism40.620.00353
GO:0006066alcohol metabolism51.070.00433
GO:0046907intracellular transport72.100.00517
GO:0044262cellular carbohydrate metabolism72.120.00539
GO:0051649establishment of cellular localization72.130.00546
GO:0051641cellular localization72.130.00553
GO:0019752carboxylic acid metabolism82.710.00573
GO:0006082organic acid metabolism82.720.00586
GO:0008652amino acid biosynthesis40.720.00598
GO:0016052carbohydrate catabolism40.730.00614
GO:0044275cellular carbohydrate catabolism40.730.00614
GO:0009308amine metabolism61.650.00627
GO:0006886intracellular protein transport51.220.00771

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 8 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 5 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 36 genes

Molecular Function
  terms counts expected.values pvals
GO:0030528transcription regulator activity82.50.0026
GO:0003700transcription factor activity72.30.0061
GO:0003677DNA binding83.00.0072

Biological Pathway
  terms counts expected.values pvals
GO:0042221response to chemical stimulus71.480.00051
GO:0009725response to hormone stimulus50.810.00115
GO:0009628response to abiotic stimulus72.180.00481
GO:0045449regulation of transcription72.210.00521
GO:0009719response to endogenous stimulus51.150.00526
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism72.230.00545
GO:0031323regulation of cellular metabolism72.290.00631
GO:0019222regulation of metabolism72.310.00664
GO:0006350transcription72.320.00682

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 22 genes

Molecular Function - no significant GO terms found

Biological Pathway
  terms counts expected.values pvals
GO:0050875cellular physiological process16 9.00.0011
GO:0009987cellular process16 9.30.0017
GO:0007582physiological process1610.00.0043

Cellular Component
  terms counts expected.values pvals
GO:0043234protein complex51.20.0064

list of genes (text format)

Pattern contains 13 genes

Molecular Function - no significant GO terms found

Biological Pathway
  terms counts expected.values pvals
GO:0007047cell wall organization and biogenesis40.124.0e-06
GO:0045229external encapsulating structure organization and biogenesis40.124.0e-06
GO:0016043cell organization and biogenesis50.693.6e-04

Cellular Component
  terms counts expected.values pvals
GO:0044425membrane part40.560.0018

list of genes (text format)

Pattern contains 69 genes

Molecular Function
  terms counts expected.values pvals
GO:0003723RNA binding71.30.00025

Biological Pathway
  terms counts expected.values pvals
GO:0046907intracellular transport61.290.0018
GO:0051649establishment of cellular localization61.310.0019
GO:0051641cellular localization61.310.0019
GO:0006886intracellular protein transport40.750.0068

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 16 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 231 genes

Molecular Function
  terms counts expected.values pvals
GO:0005515protein binding28160.0031
GO:0003824catalytic activity92730.0039

Biological Pathway
  terms counts expected.values pvals
GO:0048193Golgi vesicle transport 5 0.540.00020
GO:0045045secretory pathway 5 0.950.00258
GO:0050875cellular physiological process114 94.790.00387
GO:0046903secretion 5 1.040.00397
GO:0007582physiological process124105.240.00448
GO:0044248cellular catabolism 13 5.680.00482
GO:0009056catabolism 13 5.870.00627
GO:0016192vesicle-mediated transport 5 1.220.00764
GO:0006508proteolysis 13 6.110.00865

Cellular Component
  terms counts expected.values pvals
GO:0005777peroxisome 5 0.540.00020
GO:0042579microbody 5 0.550.00022
GO:0009941chloroplast envelope 5 0.810.00130
GO:0031969chloroplast membrane 4 0.500.00151
GO:0009526plastid envelope 5 0.880.00194
GO:0042170plastid membrane 4 0.550.00221
GO:0044422organelle part2413.870.00617
GO:0044446intracellular organelle part2413.870.00617

list of genes (text format)

Pattern contains 333 genes

Molecular Function
  terms counts expected.values pvals
GO:0008270zinc ion binding2713.280.00040
GO:0004840ubiquitin conjugating enzyme activity 4 0.630.00355
GO:0008639small protein conjugating enzyme activity 4 0.680.00465
GO:0016853isomerase activity 8 2.770.00682

Biological Pathway
  terms counts expected.values pvals
GO:0048518positive regulation of biological process 71.280.00029
GO:0008380RNA splicing 40.500.00143
GO:0016192vesicle-mediated transport 71.770.00205
GO:0006631fatty acid metabolism 71.850.00263
GO:0009873ethylene mediated signaling pathway 40.700.00526
GO:0048522positive regulation of cellular process 40.750.00666
GO:0051242positive regulation of cellular physiological process 40.750.00666
GO:0009790embryonic development104.000.00715
GO:0000003reproduction125.290.00724
GO:0048193Golgi vesicle transport 40.780.00771

Cellular Component
  terms counts expected.values pvals
GO:0005622intracellular1601340.0013
GO:0044424intracellular part1541300.0031
GO:0043227membrane-bound organelle1391180.0075

list of genes (text format)

Pattern contains 23 genes

Molecular Function - no significant GO terms found

Biological Pathway
  terms counts expected.values pvals
GO:0009653morphogenesis40.320.00027
GO:0007275development51.070.00347

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 13 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 16 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 16 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 6 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 21 genes

Molecular Function
  terms counts expected.values pvals
GO:0003700transcription factor activity61.50.0024
GO:0003676nucleic acid binding82.70.0028
GO:0030528transcription regulator activity61.60.0039
GO:0003677DNA binding61.90.0090

Biological Pathway
  terms counts expected.values pvals
GO:0019222regulation of metabolism61.310.0012
GO:0050791regulation of physiological process61.460.0021
GO:0050789regulation of biological process61.560.0030
GO:0006355regulation of transcription, DNA-dependent40.730.0051
GO:0006351transcription, DNA-dependent40.750.0057
GO:0045449regulation of transcription51.250.0063
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism51.260.0065
GO:0031323regulation of cellular metabolism51.300.0073
GO:0006350transcription51.310.0077

Cellular Component
  terms counts expected.values pvals
GO:0044424intracellular part169.00.0020
GO:0043231intracellular membrane-bound organelle158.10.0025
GO:0043227membrane-bound organelle158.10.0025
GO:0005622intracellular169.20.0028
GO:0043226organelle158.50.0038
GO:0043229intracellular organelle158.50.0038
GO:0009507chloroplast 93.50.0041
GO:0009536plastid 93.60.0047
GO:0005737cytoplasm137.30.0096

list of genes (text format)

Pattern contains 8 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component - no significant GO terms found

list of genes (text format)

Pattern contains 16 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0009507chloroplast 82.50.0012
GO:0009536plastid 82.50.0014
GO:0043231intracellular membrane-bound organelle115.80.0071
GO:0043227membrane-bound organelle115.80.0071
GO:0044444cytoplasmic part105.00.0081
GO:0043226organelle116.00.0099
GO:0043229intracellular organelle116.00.0099

list of genes (text format)

Pattern contains 23 genes

Molecular Function - no significant GO terms found

Biological Pathway - no significant GO terms found

Cellular Component
  terms counts expected.values pvals
GO:0009536plastid93.60.0047

list of genes (text format)

Pattern contains 15 genes

Molecular Function - no significant GO terms found

Biological Pathway
  terms counts expected.values pvals
GO:0019752carboxylic acid metabolism40.420.00066
GO:0006082organic acid metabolism40.420.00067

Cellular Component
  terms counts expected.values pvals
GO:0009507chloroplast72.30.0040
GO:0009536plastid72.40.0045

list of genes (text format)