Initial number of affymerix ids: 22810
Number after MAS5 present/absent filter: 12742

Differential Type FDR p(MAS5,pFDR) p(pFDR,GCRMA) p(pFDR,VSN) Incidence p(BUM,MAS5) p(BUM,GCRMA) p(BUM,VSN) Incidence

Tissue 0.05 0.05 0.03 0.02 2897 0.06 0.02 0.02 2723

Hour 0.05 0.15 0.24 0.03 5409 0.08 0.03 0.03 4375

Tissue and Hour 0.05 0.00 0.00 0.00 1 0.00 0.00 0.00 10

All 0.05 - - - 6703 - - - 5804

Differential Type	FDR	p(MAS5,pFDR)	p(pFDR,GCRMA)	p(pFDR,VSN)	Incidence	p(BUM,MAS5)	p(BUM,GCRMA)	p(BUM,VSN)	Incidence
Tissue	0.05	0.05	0.03	0.02	2897	0.06	0.02	0.02	2723
Hour	0.05	0.15	0.24	0.03	5409	0.08	0.03	0.03	4375
Tissue and Hour	0.05	0.00	0.00	0.00	1	0.00	0.00	0.00	10
All	0.05	-	-	-	6703	-	-	-	5804

Number of BUM affy ids after fold 2 change filter: 5620